CircRNA Information

General Information
circRNA Basic Information
CircID chr5:9340791|9340989
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence ATTGGCTTCTATCTCACTGATACCAAGAGAGCCTTGCAAGAAAGTCTCTGCACCAACTCACCTCTTGAACTAAAAAGAAGCCTGCACCAATACCTATCCTCCCAACTTTCCCAACAGATCAGAGAAAAGGCACTCAATCCTCTTTTCAAAGACCAGTTGCTCTCATCTCTTCTTTCCCCTTTAATCGCTTCTCAATTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:9340791|9340989 hsa-miR-143-5p 0 0 1
chr5:9340791|9340989 hsa-miR-143-3p 0 0 1
chr5:9340791|9340989 hsa-miR-335-5p 0 0 1
chr5:9340791|9340989 hsa-miR-335-3p 0 0 1
chr5:9340791|9340989 hsa-miR-519e-5p 0 0 1
chr5:9340791|9340989 hsa-miR-519e-3p 0 0 1
chr5:9340791|9340989 hsa-miR-571 0 0 1
chr5:9340791|9340989 hsa-miR-578 0 0 1
chr5:9340791|9340989 hsa-miR-580-5p 0 0 1
chr5:9340791|9340989 hsa-miR-580-3p 0 0 1
chr5:9340791|9340989 hsa-miR-583 0 0 1
chr5:9340791|9340989 hsa-miR-1253 0 0 1
chr5:9340791|9340989 hsa-miR-1267 0 0 1
chr5:9340791|9340989 hsa-miR-331-5p 0 1 1
chr5:9340791|9340989 hsa-miR-515-3p 0 1 1
chr5:9340791|9340989 hsa-miR-582-3p 0 0 1
chr5:9340791|9340989 hsa-miR-1300 0 0 1
chr5:9340791|9340989 hsa-miR-219-1-3p 0 0 1
chr5:9340791|9340989 hsa-miR-1185 0 0 1
chr5:9340791|9340989 hsa-miR-573 1 0 0
chr5:9340791|9340989 hsa-miR-608 1 0 0
chr5:9340791|9340989 hsa-miR-765 1 0 0
chr5:9340791|9340989 hsa-miR-3132 1 0 0
chr5:9340791|9340989 hsa-miR-3147 1 0 0
chr5:9340791|9340989 hsa-miR-3153 1 1 0
chr5:9340791|9340989 hsa-miR-3154 1 0 0
chr5:9340791|9340989 hsa-miR-3175 1 0 0
chr5:9340791|9340989 hsa-miR-4298 1 0 0
chr5:9340791|9340989 hsa-miR-4259 1 0 0
chr5:9340791|9340989 hsa-miR-4271 1 1 0
chr5:9340791|9340989 hsa-miR-4425 1 0 0
chr5:9340791|9340989 hsa-miR-4466 1 0 0
chr5:9340791|9340989 hsa-miR-3689c 1 1 0
chr5:9340791|9340989 hsa-miR-4489 1 0 0
chr5:9340791|9340989 hsa-miR-2392 1 0 0
chr5:9340791|9340989 hsa-miR-4525 1 0 0
chr5:9340791|9340989 hsa-miR-4656 1 0 0
chr5:9340791|9340989 hsa-miR-4689 1 0 0
chr5:9340791|9340989 hsa-miR-4734 1 0 0
chr5:9340791|9340989 hsa-miR-4739 1 0 0
chr5:9340791|9340989 hsa-miR-4784 1 0 0
chr5:9340791|9340989 hsa-miR-5192 1 0 0
chr5:9340791|9340989 hsa-miR-5703 1 0 0
chr5:9340791|9340989 hsa-miR-5739 1 0 0
chr5:9340791|9340989 hsa-miR-6086 1 0 0
chr5:9340791|9340989 hsa-miR-6088 0 1 0
chr5:9340791|9340989 hsa-miR-6090 1 0 0
chr5:9340791|9340989 hsa-miR-8085 1 1 0
chr5:9340791|9340989 hsa-miR-92a-1-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6734-5p 1 0 0
chr5:9340791|9340989 hsa-miR-3150a-3p 1 0 0
chr5:9340791|9340989 hsa-miR-7106-5p 1 1 0
chr5:9340791|9340989 hsa-miR-6825-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6894-5p 1 1 0
chr5:9340791|9340989 hsa-miR-6857-5p 1 0 0
chr5:9340791|9340989 hsa-miR-4687-3p 1 0 0
chr5:9340791|9340989 hsa-miR-6799-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6728-5p 1 0 0
chr5:9340791|9340989 hsa-miR-766-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6833-5p 1 0 0
chr5:9340791|9340989 hsa-miR-3192-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6730-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6721-5p 1 0 0
chr5:9340791|9340989 hsa-miR-197-5p 1 0 0
chr5:9340791|9340989 hsa-miR-8069 1 0 0
chr5:9340791|9340989 hsa-miR-3663-5p 1 0 0
chr5:9340791|9340989 hsa-miR-3180-3p 1 0 0
chr5:9340791|9340989 hsa-miR-6772-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6798-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6881-5p 1 0 0
chr5:9340791|9340989 hsa-miR-2467-3p 1 0 0
chr5:9340791|9340989 hsa-miR-30b-3p 1 0 0
chr5:9340791|9340989 hsa-miR-6835-5p 1 0 0
chr5:9340791|9340989 hsa-miR-7109-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6740-5p 1 0 0
chr5:9340791|9340989 hsa-miR-1229-5p 1 0 0
chr5:9340791|9340989 hsa-miR-296-3p 1 0 0
chr5:9340791|9340989 hsa-miR-6771-5p 1 0 0
chr5:9340791|9340989 hsa-miR-7854-3p 0 1 0
chr5:9340791|9340989 hsa-miR-149-3p 1 0 0
chr5:9340791|9340989 hsa-miR-5010-5p 1 0 0
chr5:9340791|9340989 hsa-miR-7152-3p 1 0 0
chr5:9340791|9340989 hsa-miR-5197-3p 0 1 0
chr5:9340791|9340989 hsa-miR-1233-5p 1 0 0
chr5:9340791|9340989 hsa-miR-1273h-5p 1 0 0
chr5:9340791|9340989 hsa-miR-3689b-3p 1 1 0
chr5:9340791|9340989 hsa-miR-6778-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6812-5p 1 0 0
chr5:9340791|9340989 hsa-miR-11181-3p 1 0 0
chr5:9340791|9340989 hsa-miR-6779-5p 1 1 0
chr5:9340791|9340989 hsa-miR-6780a-5p 1 1 0
chr5:9340791|9340989 hsa-miR-6788-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6797-5p 1 0 0
chr5:9340791|9340989 hsa-miR-4728-5p 1 0 0
chr5:9340791|9340989 hsa-miR-5196-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6780b-5p 1 0 0
chr5:9340791|9340989 hsa-miR-10526-3p 1 1 0
chr5:9340791|9340989 hsa-miR-3689a-3p 1 1 0
chr5:9340791|9340989 hsa-miR-4725-3p 1 0 0
chr5:9340791|9340989 hsa-miR-6738-5p 1 0 0
chr5:9340791|9340989 hsa-miR-675-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6794-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6795-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6858-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6883-5p 1 1 0
chr5:9340791|9340989 hsa-miR-6887-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6511b-5p 1 0 0
chr5:9340791|9340989 hsa-miR-3940-5p 1 0 0
chr5:9340791|9340989 hsa-miR-6731-5p 1 0 0
chr5:9340791|9340989 hsa-miR-3679-5p 1 0 0
chr5:9340791|9340989 hsa-miR-4646-5p 1 0 0
chr5:9340791|9340989 hsa-miR-4747-5p 1 0 0
chr5:9340791|9340989 hsa-miR-4716-3p 1 1 0
chr5:9340791|9340989 hsa-miR-6785-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:9340791|9340989
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MQESLCTNSPLELKRSLHQYLSSQLSQQIREKALNPLFKDQLLSSLLSPLIASQL
Nucleotide Sequence TTGCAAGAAAGTCTCTGCACCAACTCACCTCTTGAACTAAAAAGAAGCCTGCACCAATACCTATCCTCCCAACTTTCCCAACAGATCAGAGAAAAGGCACTCAATCCTCTTTTCAAAGACCAGTTGCTCTCATCTCTTCTTTCCCCTTTAATCGCTTCTCAATTA
CircID chr5:9340791|9340989
ORF Type ORF2
Protein Length 46
Nucleotide Length 141
Protein Sequence MKRGLSAFSLICWESWEDRYWCRLLFSSRGELVQRLSCKALLVSVR
Nucleotide Sequence TTGAAAAGAGGATTGAGTGCCTTTTCTCTGATCTGTTGGGAAAGTTGGGAGGATAGGTATTGGTGCAGGCTTCTTTTTAGTTCAAGAGGTGAGTTGGTGCAGAGACTTTCTTGCAAGGCTCTCTTGGTATCAGTGAGATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab