CircRNA Information

General Information
circRNA Basic Information
CircID chr5:94628902|94629167
Strand +
CircType exon
Host Gene ENSG00000133302.11;
Algorism CIRI2;
Sequence CTGCCGCACAAGCTGCTAAAAATTTTTCACTCTTACATAGGCGTTCAGCTATAAGATGTGTACAATTTTTGTATTTCTGGAGGGAAAAATCCACATCAAGAAATGTTACTAAAGTAAGACTCCCTTTATGACACATCCTTTTTATTGCTACAATATCAAGAAGGCATTTTATCATTCTTAGGCCAGTATTTGAATTGTAGTTATTTTTCAAATATATCTTGAACATTTTGATAAGTTTCTTACCTCACTCTTAATAAAAGTGCAAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:94628902|94629167 hsa-let-7b-5p 0 0 1
chr5:94628902|94629167 hsa-let-7b-3p 0 0 1
chr5:94628902|94629167 hsa-let-7c-5p 0 0 1
chr5:94628902|94629167 hsa-let-7c-3p 0 0 1
chr5:94628902|94629167 hsa-let-7d-5p 0 0 1
chr5:94628902|94629167 hsa-let-7d-3p 0 0 1
chr5:94628902|94629167 hsa-let-7e-5p 0 0 1
chr5:94628902|94629167 hsa-let-7e-3p 0 0 1
chr5:94628902|94629167 hsa-miR-15a-5p 0 0 1
chr5:94628902|94629167 hsa-miR-15a-3p 0 0 1
chr5:94628902|94629167 hsa-miR-25-5p 0 0 1
chr5:94628902|94629167 hsa-miR-25-3p 0 0 1
chr5:94628902|94629167 hsa-miR-32-5p 0 0 1
chr5:94628902|94629167 hsa-miR-32-3p 0 0 1
chr5:94628902|94629167 hsa-miR-98-5p 0 0 1
chr5:94628902|94629167 hsa-miR-98-3p 0 0 1
chr5:94628902|94629167 hsa-miR-210-5p 0 0 1
chr5:94628902|94629167 hsa-miR-210-3p 0 0 1
chr5:94628902|94629167 hsa-miR-200b-5p 0 0 1
chr5:94628902|94629167 hsa-miR-200b-3p 0 0 1
chr5:94628902|94629167 hsa-let-7g-5p 0 0 1
chr5:94628902|94629167 hsa-let-7g-3p 0 0 1
chr5:94628902|94629167 hsa-let-7i-5p 0 0 1
chr5:94628902|94629167 hsa-let-7i-3p 0 0 1
chr5:94628902|94629167 hsa-miR-15b-5p 0 0 1
chr5:94628902|94629167 hsa-miR-15b-3p 0 0 1
chr5:94628902|94629167 hsa-miR-195-5p 0 0 1
chr5:94628902|94629167 hsa-miR-195-3p 0 0 1
chr5:94628902|94629167 hsa-miR-200c-5p 0 0 1
chr5:94628902|94629167 hsa-miR-200c-3p 0 0 1
chr5:94628902|94629167 hsa-miR-363-5p 0 0 1
chr5:94628902|94629167 hsa-miR-363-3p 0 0 1
chr5:94628902|94629167 hsa-miR-367-5p 0 0 1
chr5:94628902|94629167 hsa-miR-367-3p 0 0 1
chr5:94628902|94629167 hsa-miR-380-5p 0 0 1
chr5:94628902|94629167 hsa-miR-380-3p 0 0 1
chr5:94628902|94629167 hsa-miR-424-5p 0 0 1
chr5:94628902|94629167 hsa-miR-424-3p 0 0 1
chr5:94628902|94629167 hsa-miR-429 0 0 1
chr5:94628902|94629167 hsa-miR-202-5p 0 0 1
chr5:94628902|94629167 hsa-miR-202-3p 0 0 1
chr5:94628902|94629167 hsa-miR-193b-5p 0 0 1
chr5:94628902|94629167 hsa-miR-193b-3p 0 0 1
chr5:94628902|94629167 hsa-miR-497-5p 0 0 1
chr5:94628902|94629167 hsa-miR-497-3p 0 0 1
chr5:94628902|94629167 hsa-miR-526b-5p 0 0 1
chr5:94628902|94629167 hsa-miR-526b-3p 0 0 1
chr5:94628902|94629167 hsa-miR-503-5p 0 0 1
chr5:94628902|94629167 hsa-miR-503-3p 0 0 1
chr5:94628902|94629167 hsa-miR-92b-5p 0 0 1
chr5:94628902|94629167 hsa-miR-92b-3p 0 0 1
chr5:94628902|94629167 hsa-miR-578 0 0 1
chr5:94628902|94629167 hsa-miR-592 0 0 1
chr5:94628902|94629167 hsa-miR-597-5p 0 0 1
chr5:94628902|94629167 hsa-miR-597-3p 0 0 1
chr5:94628902|94629167 hsa-miR-606 0 0 1
chr5:94628902|94629167 hsa-miR-607 0 0 1
chr5:94628902|94629167 hsa-miR-614 0 0 1
chr5:94628902|94629167 hsa-miR-646 0 0 1
chr5:94628902|94629167 hsa-miR-802 0 0 1
chr5:94628902|94629167 hsa-miR-892b 0 0 1
chr5:94628902|94629167 hsa-miR-147b-5p 0 0 1
chr5:94628902|94629167 hsa-miR-147b-3p 0 0 1
chr5:94628902|94629167 hsa-miR-543 0 0 1
chr5:94628902|94629167 hsa-miR-924 0 0 1
chr5:94628902|94629167 hsa-miR-1290 0 0 1
chr5:94628902|94629167 hsa-miR-1294 0 0 1
chr5:94628902|94629167 hsa-miR-1248 0 0 1
chr5:94628902|94629167 hsa-miR-1265 0 0 1
chr5:94628902|94629167 hsa-miR-532-5p 0 0 1
chr5:94628902|94629167 hsa-miR-876-5p 0 0 1
chr5:94628902|94629167 hsa-miR-193a-3p 0 0 1
chr5:94628902|94629167 hsa-miR-642 0 0 1
chr5:94628902|94629167 hsa-miR-16 0 0 1
chr5:94628902|94629167 hsa-let-7a 0 0 1
chr5:94628902|94629167 hsa-let-7f 0 0 1
chr5:94628902|94629167 hsa-miR-92a 0 0 1
chr5:94628902|94629167 hsa-miR-3176 0 1 0
chr5:94628902|94629167 hsa-miR-548w 0 1 0
chr5:94628902|94629167 hsa-miR-548ak 0 1 0
chr5:94628902|94629167 hsa-miR-4433b-3p 1 0 0
chr5:94628902|94629167 hsa-miR-4433a-3p 1 0 0
chr5:94628902|94629167 hsa-miR-7154-5p 0 1 0
chr5:94628902|94629167 hsa-miR-6777-5p 1 0 0
chr5:94628902|94629167 hsa-miR-515-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:94628902|94629167
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MLQYQEGILSFLGQYLNCSYFSNIS
Nucleotide Sequence TTGCTACAATATCAAGAAGGCATTTTATCATTCTTAGGCCAGTATTTGAATTGTAGTTATTTTTCAAATATATCTTGA
CircID chr5:94628902|94629167
ORF Type ORF2
Protein Length 75
Nucleotide Length 225
Protein Sequence MFKIYLKNNYNSNTGLRMIKCLLDIVAIKRMCHKGSLTLVTFLDVDFSLQKYKNCTHLIAERLCKSEKFLAACAA
Nucleotide Sequence ATGTTCAAGATATATTTGAAAAATAACTACAATTCAAATACTGGCCTAAGAATGATAAAATGCCTTCTTGATATTGTAGCAATAAAAAGGATGTGTCATAAAGGGAGTCTTACTTTAGTAACATTTCTTGATGTGGATTTTTCCCTCCAGAAATACAAAAATTGTACACATCTTATAGCTGAACGCCTATGTAAGAGTGAAAAATTTTTAGCAGCTTGTGCGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab