CircRNA Information

General Information
circRNA Basic Information
CircID chr6:109167575|109167751
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CACACCCTGCCCCTCCCCAAACAAACAATACTGGGCTATTCCTTTTTTCTTTTCTTTTCTTTTTTTTTTTGCTTTGAGGCAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACCGCAACCTCTGCCTCCCAGGTTCAAGCAATTATCCTGCCTCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:109167575|109167751 hsa-miR-612 0 0 1
chr6:109167575|109167751 hsa-miR-650 0 1 1
chr6:109167575|109167751 hsa-miR-661 0 0 1
chr6:109167575|109167751 hsa-miR-766-5p 0 0 1
chr6:109167575|109167751 hsa-miR-766-3p 0 0 1
chr6:109167575|109167751 hsa-miR-939-5p 0 0 1
chr6:109167575|109167751 hsa-miR-939-3p 0 0 1
chr6:109167575|109167751 hsa-miR-940 0 0 1
chr6:109167575|109167751 hsa-miR-1227-5p 0 0 1
chr6:109167575|109167751 hsa-miR-1227-3p 0 0 1
chr6:109167575|109167751 hsa-miR-302f 0 0 1
chr6:109167575|109167751 hsa-miR-548p 0 0 1
chr6:109167575|109167751 hsa-miR-1827 0 1 1
chr6:109167575|109167751 hsa-miR-486-3p 0 0 1
chr6:109167575|109167751 hsa-miR-490-3p 0 0 1
chr6:109167575|109167751 hsa-miR-423-5p 0 1 1
chr6:109167575|109167751 hsa-miR-330-3p 0 0 1
chr6:109167575|109167751 hsa-miR-508-5p 0 1 1
chr6:109167575|109167751 hsa-miR-1207-5p 1 0 1
chr6:109167575|109167751 hsa-miR-1285 0 0 1
chr6:109167575|109167751 hsa-miR-638 1 0 0
chr6:109167575|109167751 hsa-miR-4298 1 0 0
chr6:109167575|109167751 hsa-miR-4321 1 0 0
chr6:109167575|109167751 hsa-miR-4432 0 1 0
chr6:109167575|109167751 hsa-miR-3689c 0 1 0
chr6:109167575|109167751 hsa-miR-4522 0 1 0
chr6:109167575|109167751 hsa-miR-4537 0 1 0
chr6:109167575|109167751 hsa-miR-4688 1 0 0
chr6:109167575|109167751 hsa-miR-4739 1 0 0
chr6:109167575|109167751 hsa-miR-5684 0 1 0
chr6:109167575|109167751 hsa-miR-6086 0 1 0
chr6:109167575|109167751 hsa-miR-6124 0 1 0
chr6:109167575|109167751 hsa-miR-7703 0 1 0
chr6:109167575|109167751 hsa-miR-12127 0 1 0
chr6:109167575|109167751 hsa-miR-196a-3p 0 1 0
chr6:109167575|109167751 hsa-miR-6765-5p 1 0 0
chr6:109167575|109167751 hsa-miR-6825-5p 0 1 0
chr6:109167575|109167751 hsa-miR-6720-5p 0 1 0
chr6:109167575|109167751 hsa-miR-7851-3p 1 1 0
chr6:109167575|109167751 hsa-miR-6089 1 0 0
chr6:109167575|109167751 hsa-miR-3192-5p 0 1 0
chr6:109167575|109167751 hsa-miR-4722-5p 1 0 0
chr6:109167575|109167751 hsa-miR-4655-5p 1 0 0
chr6:109167575|109167751 hsa-miR-6849-3p 0 1 0
chr6:109167575|109167751 hsa-miR-30b-3p 0 1 0
chr6:109167575|109167751 hsa-miR-6740-5p 0 1 0
chr6:109167575|109167751 hsa-let-7d-5p 0 1 0
chr6:109167575|109167751 hsa-let-7b-5p 0 1 0
chr6:109167575|109167751 hsa-miR-4743-5p 1 0 0
chr6:109167575|109167751 hsa-miR-149-3p 0 1 0
chr6:109167575|109167751 hsa-miR-654-5p 1 0 0
chr6:109167575|109167751 hsa-let-7i-5p 0 1 0
chr6:109167575|109167751 hsa-let-7c-5p 0 1 0
chr6:109167575|109167751 hsa-let-7e-5p 0 1 0
chr6:109167575|109167751 hsa-miR-1273h-5p 0 1 0
chr6:109167575|109167751 hsa-miR-3689b-3p 0 1 0
chr6:109167575|109167751 hsa-miR-4763-3p 1 1 0
chr6:109167575|109167751 hsa-miR-6893-5p 0 1 0
chr6:109167575|109167751 hsa-miR-6743-5p 1 1 0
chr6:109167575|109167751 hsa-miR-7107-5p 0 1 0
chr6:109167575|109167751 hsa-miR-6722-3p 1 1 0
chr6:109167575|109167751 hsa-miR-6763-5p 0 1 0
chr6:109167575|109167751 hsa-miR-6779-5p 0 1 0
chr6:109167575|109167751 hsa-miR-4728-5p 0 1 0
chr6:109167575|109167751 hsa-miR-5189-5p 0 1 0
chr6:109167575|109167751 hsa-miR-328-5p 0 1 0
chr6:109167575|109167751 hsa-miR-3689a-3p 0 1 0
chr6:109167575|109167751 hsa-miR-6883-5p 0 1 0
chr6:109167575|109167751 hsa-miR-6511a-5p 0 1 0
chr6:109167575|109167751 hsa-miR-1285-3p 0 1 0
chr6:109167575|109167751 hsa-miR-377-5p 0 1 0
chr6:109167575|109167751 hsa-miR-6807-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:109167575|109167751
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence MPLPKQTILGYSFFLFFSFFFCFEAESCSVAQAGVQWHNLGSPQPLPPRFKQLSCLS
Nucleotide Sequence CTGCCCCTCCCCAAACAAACAATACTGGGCTATTCCTTTTTTCTTTTCTTTTCTTTTTTTTTTTGCTTTGAGGCAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACCGCAACCTCTGCCTCCCAGGTTCAAGCAATTATCCTGCCTCAGC
CircID chr6:109167575|109167751
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MRQSLALLPRLECSGTISAHRNLCLPGSSNYPAS
Nucleotide Sequence TTGAGGCAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACCGCAACCTCTGCCTCCCAGGTTCAAGCAATTATCCTGCCTCA
CircID chr6:109167575|109167751
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MLCCPGWSAVAQSRLTATSASQVQAIILPQ
Nucleotide Sequence TTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACCGCAACCTCTGCCTCCCAGGTTCAAGCAATTATCCTGCCTCAG
CircID chr6:109167575|109167751
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MHSSLGNRARLCLKAKKKRKEKKKGIAQYCLFGEGQGV
Nucleotide Sequence CTGCACTCCAGCCTGGGCAACAGAGCAAGACTCTGCCTCAAAGCAAAAAAAAAAAGAAAAGAAAAGAAAAAAGGAATAGCCCAGTATTGTTTGTTTGGGGAGGGGCAGGGTGTG
CircID chr6:109167575|109167751
ORF Type ORF5
Protein Length 46
Nucleotide Length 141
Protein Sequence LRQDNCLNLGGRGCGEPRLCHCTPAWATEQDSASKQKKKEKKRKKE
Nucleotide Sequence CTGAGGCAGGATAATTGCTTGAACCTGGGAGGCAGAGGTTGCGGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCTGCCTCAAAGCAAAAAAAAAAAGAAAAGAAAAGAAAAAAGGAATAG
CircID chr6:109167575|109167751
ORF Type ORF6
Protein Length 27
Nucleotide Length 81
Protein Sequence MPQSKKKKKRKEKRNSPVLFVWGGAGC
Nucleotide Sequence CTGCCTCAAAGCAAAAAAAAAAAGAAAAGAAAAGAAAAAAGGAATAGCCCAGTATTGTTTGTTTGGGGAGGGGCAGGGTGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab