CircRNA Information

General Information
circRNA Basic Information
CircID chr6:116121791|116121919
Strand -
CircType exon
Host Gene ENSG00000123500.8;
Algorism CIRI2;
Sequence CTGGTTTCCCTACAGCTGATGGTCCCGGTGGTCCTGGCAACCCTGGCTCTCCTTGGAGTCCAGGACTTCCGTAGCCTGGTTTTCCTGGTGGTCCAGAAGGACCTGGGTGCCCTCGAGGTCCAGCAGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:116121791|116121919 hsa-miR-370-5p 0 0 1
chr6:116121791|116121919 hsa-miR-370-3p 0 0 1
chr6:116121791|116121919 hsa-miR-422a 0 1 1
chr6:116121791|116121919 hsa-miR-492 0 0 1
chr6:116121791|116121919 hsa-miR-1237-5p 0 0 1
chr6:116121791|116121919 hsa-miR-1237-3p 0 0 1
chr6:116121791|116121919 hsa-miR-1202 0 0 1
chr6:116121791|116121919 hsa-miR-1287-5p 0 0 1
chr6:116121791|116121919 hsa-miR-1287-3p 0 0 1
chr6:116121791|116121919 hsa-miR-1299 0 0 1
chr6:116121791|116121919 hsa-miR-1248 0 0 1
chr6:116121791|116121919 hsa-miR-296-3p 0 0 1
chr6:116121791|116121919 hsa-miR-1207-3p 0 0 1
chr6:116121791|116121919 hsa-miR-378 0 0 1
chr6:116121791|116121919 hsa-miR-516b 0 0 1
chr6:116121791|116121919 hsa-miR-378b 0 1 0
chr6:116121791|116121919 hsa-miR-378c 0 1 0
chr6:116121791|116121919 hsa-miR-378e 0 1 0
chr6:116121791|116121919 hsa-miR-378f 0 1 0
chr6:116121791|116121919 hsa-miR-4521 0 1 0
chr6:116121791|116121919 hsa-miR-378i 0 1 0
chr6:116121791|116121919 hsa-miR-5695 0 1 0
chr6:116121791|116121919 hsa-miR-9900 0 1 0
chr6:116121791|116121919 hsa-miR-4726-3p 1 1 0
chr6:116121791|116121919 hsa-miR-3692-5p 0 1 0
chr6:116121791|116121919 hsa-miR-1226-5p 1 1 0
chr6:116121791|116121919 hsa-miR-6823-5p 0 1 0
chr6:116121791|116121919 hsa-miR-6501-5p 0 1 0
chr6:116121791|116121919 hsa-miR-3690 0 1 0
chr6:116121791|116121919 hsa-miR-4776-5p 0 1 0
chr6:116121791|116121919 hsa-miR-1911-3p 0 1 0
chr6:116121791|116121919 hsa-miR-3619-3p 1 0 0
chr6:116121791|116121919 hsa-miR-7113-5p 0 1 0
chr6:116121791|116121919 hsa-miR-6790-3p 0 1 0
chr6:116121791|116121919 hsa-miR-378a-3p 0 1 0
chr6:116121791|116121919 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr6:116121791|116121919
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence LVSLQLMVPVVLATLALLGVQDFRSLVFLVVQKDLGALEVQQG
Nucleotide Sequence CTGGTTTCCCTACAGCTGATGGTCCCGGTGGTCCTGGCAACCCTGGCTCTCCTTGGAGTCCAGGACTTCCGTAGCCTGGTTTTCCTGGTGGTCCAGAAGGACCTGGGTGCCCTCGAGGTCCAGCAGGGC

CircID chr6:116121791|116121919
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MESRTSVAWFSWWSRRTWVPSRSSR
Nucleotide Sequence TTGGAGTCCAGGACTTCCGTAGCCTGGTTTTCCTGGTGGTCCAGAAGGACCTGGGTGCCCTCGAGGTCCAGCAGG

CircID chr6:116121791|116121919
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MLDLEGTQVLLDHQENQATEVLDSKESQGCQDHRDHQL
Nucleotide Sequence CTGCTGGACCTCGAGGGCACCCAGGTCCTTCTGGACCACCAGGAAAACCAGGCTACGGAAGTCCTGGACTCCAAGGAGAGCCAGGGTTGCCAGGACCACCGGGACCATCAGCTGTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites