CircRNA Information

General Information
circRNA Basic Information
CircID chr6:122724389|122724599
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TCCCCGTGATCTGTGCTTATTCTTTCTGCCTTCCCTCTTTTTACAATGGAAGATGCACTTGTGAGCACTGGCTATGTAATTTGTTGGTGCCCAGTGCAAAATGAAAATGCAGTACGCTTGTTCAAAAATAATGAAAAATTTCAAGACAGCAAGAATAGAACATTAAACCAAATGCAAGTCTCTTCTAATCAAGGAGCCCTATGCAACCACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:122724389|122724599 hsa-miR-33a-5p 0 0 1
chr6:122724389|122724599 hsa-miR-33a-3p 0 0 1
chr6:122724389|122724599 hsa-miR-217-5p 0 0 1
chr6:122724389|122724599 hsa-miR-217-3p 0 0 1
chr6:122724389|122724599 hsa-miR-186-5p 0 0 1
chr6:122724389|122724599 hsa-miR-186-3p 0 0 1
chr6:122724389|122724599 hsa-miR-376c-5p 0 0 1
chr6:122724389|122724599 hsa-miR-376c-3p 0 0 1
chr6:122724389|122724599 hsa-miR-448 -5 0 1
chr6:122724389|122724599 hsa-miR-431-5p 0 0 1
chr6:122724389|122724599 hsa-miR-431-3p 0 0 1
chr6:122724389|122724599 hsa-miR-507 3 0 1
chr6:122724389|122724599 hsa-miR-557 -5 1 1
chr6:122724389|122724599 hsa-miR-575 0 0 1
chr6:122724389|122724599 hsa-miR-579-5p 0 0 1
chr6:122724389|122724599 hsa-miR-579-3p 0 0 1
chr6:122724389|122724599 hsa-miR-583 -8 0 1
chr6:122724389|122724599 hsa-miR-612 -5 0 1
chr6:122724389|122724599 hsa-miR-626 -11 0 1
chr6:122724389|122724599 hsa-miR-33b-5p 0 0 1
chr6:122724389|122724599 hsa-miR-33b-3p 0 0 1
chr6:122724389|122724599 hsa-miR-659-5p 0 0 1
chr6:122724389|122724599 hsa-miR-659-3p 0 0 1
chr6:122724389|122724599 hsa-miR-1178-5p 0 0 1
chr6:122724389|122724599 hsa-miR-1178-3p 0 0 1
chr6:122724389|122724599 hsa-miR-513b-5p 0 0 1
chr6:122724389|122724599 hsa-miR-513b-3p 0 0 1
chr6:122724389|122724599 hsa-miR-1825 5 0 1
chr6:122724389|122724599 hsa-miR-876-3p 0 0 1
chr6:122724389|122724599 hsa-miR-409-3p -1 0 1
chr6:122724389|122724599 hsa-miR-299-5p -3 0 1
chr6:122724389|122724599 hsa-miR-509-3-5p 0 0 1
chr6:122724389|122724599 hsa-miR-509-5p 0 0 1
chr6:122724389|122724599 hsa-miR-519b-3p -6 0 1
chr6:122724389|122724599 hsa-miR-519c-3p -11 0 1
chr6:122724389|122724599 hsa-miR-450b-5p -4 0 1
chr6:122724389|122724599 hsa-miR-153 0 0 1
chr6:122724389|122724599 hsa-miR-1285 0 0 1
chr6:122724389|122724599 hsa-miR-203 0 0 1
chr6:122724389|122724599 hsa-miR-519a 0 0 1
chr6:122724389|122724599 hsa-miR-4448 -12 1 0
chr6:122724389|122724599 hsa-miR-141-5p -4 1 0
chr6:122724389|122724599 hsa-miR-4435 -7 1 0
chr6:122724389|122724599 hsa-miR-6873-5p -16 1 0
chr6:122724389|122724599 hsa-miR-593-5p -12 1 0
chr6:122724389|122724599 hsa-miR-5088-5p -21 1 0
chr6:122724389|122724599 hsa-miR-103b -1 1 0
chr6:122724389|122724599 hsa-miR-4742-3p 0 1 0
chr6:122724389|122724599 hsa-miR-6797-5p -21 1 0
chr6:122724389|122724599 hsa-miR-4728-5p -20 1 0
chr6:122724389|122724599 hsa-miR-5189-5p -9 1 0
chr6:122724389|122724599 hsa-miR-5196-5p -16 1 0
chr6:122724389|122724599 hsa-miR-4436b-3p -20 1 0
chr6:122724389|122724599 hsa-miR-1910-3p -17 1 0
chr6:122724389|122724599 hsa-miR-6739-5p -11 1 0
chr6:122724389|122724599 hsa-miR-9851-3p -10 1 0
chr6:122724389|122724599 hsa-miR-4676-5p -1 1 0
chr6:122724389|122724599 hsa-miR-519a-3p -5 1 0
chr6:122724389|122724599 hsa-miR-7-1-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:122724389|122724599
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MEDALVSTGYVICWCPVQNENAVRLFKNNEKFQDSKNRTLNQMQVSSNQGALCNH
Nucleotide Sequence ATGGAAGATGCACTTGTGAGCACTGGCTATGTAATTTGTTGGTGCCCAGTGCAAAATGAAAATGCAGTACGCTTGTTCAAAAATAATGAAAAATTTCAAGACAGCAAGAATAGAACATTAAACCAAATGCAAGTCTCTTCTAATCAAGGAGCCCTATGCAACCAC
CircID chr6:122724389|122724599
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MKFFIIFEQAYCIFILHWAPTNYIASAHKCIFHCKKREGRKNKHRSRG
Nucleotide Sequence TTGAAATTTTTCATTATTTTTGAACAAGCGTACTGCATTTTCATTTTGCACTGGGCACCAACAAATTACATAGCCAGTGCTCACAAGTGCATCTTCCATTGTAAAAAGAGGGAAGGCAGAAAGAATAAGCACAGATCACGGGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab