CircRNA Information

General Information
circRNA Basic Information
CircID chr6:126340178|126340364
Strand -
CircType exon
Host Gene ENSG00000203760.7;
Algorism CIRI2;
Sequence GGACCGGATTGTTTTCGCTGGCCCAGTGTCCCCGGAGCTTGTGTGCGATACAGAGAGCACCTCGGAAGCTGAGGCAGCTGGTACTTGACAGAGAGGATGGCGCTGTCGACCATAGTCTCCCAGAGGAAGCAGATAAAGCGGAAGGCTCCCCGTGGCTTTCTAAAGCGAGTCTTCAAGCGAAAGAAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:126340178|126340364 hsa-miR-22-5p 0 0 1
chr6:126340178|126340364 hsa-miR-22-3p 0 0 1
chr6:126340178|126340364 hsa-miR-26b-5p 0 0 1
chr6:126340178|126340364 hsa-miR-26b-3p 0 0 1
chr6:126340178|126340364 hsa-miR-326 0 0 1
chr6:126340178|126340364 hsa-miR-570-5p 0 0 1
chr6:126340178|126340364 hsa-miR-570-3p 0 0 1
chr6:126340178|126340364 hsa-miR-572 0 0 1
chr6:126340178|126340364 hsa-miR-634 0 0 1
chr6:126340178|126340364 hsa-miR-939-5p 0 0 1
chr6:126340178|126340364 hsa-miR-939-3p 0 0 1
chr6:126340178|126340364 hsa-miR-1297 0 0 1
chr6:126340178|126340364 hsa-miR-330-5p 0 0 1
chr6:126340178|126340364 hsa-miR-516a-3p 0 1 1
chr6:126340178|126340364 hsa-miR-26a 0 0 1
chr6:126340178|126340364 hsa-miR-632 1 1 0
chr6:126340178|126340364 hsa-miR-637 1 0 0
chr6:126340178|126340364 hsa-miR-1825 1 0 0
chr6:126340178|126340364 hsa-miR-3907 0 1 0
chr6:126340178|126340364 hsa-miR-4706 1 0 0
chr6:126340178|126340364 hsa-miR-8089 1 0 0
chr6:126340178|126340364 hsa-miR-103a-2-5p 1 0 0
chr6:126340178|126340364 hsa-miR-7155-5p 1 0 0
chr6:126340178|126340364 hsa-miR-671-5p 1 0 0
chr6:126340178|126340364 hsa-miR-3192-5p 0 1 0
chr6:126340178|126340364 hsa-miR-6762-3p 1 0 0
chr6:126340178|126340364 hsa-miR-6787-3p 0 1 0
chr6:126340178|126340364 hsa-miR-6882-3p 0 1 0
chr6:126340178|126340364 hsa-miR-2277-3p 1 1 0
chr6:126340178|126340364 hsa-miR-4640-5p 0 1 0
chr6:126340178|126340364 hsa-miR-3648 1 0 0
chr6:126340178|126340364 hsa-miR-4776-3p 1 0 0
chr6:126340178|126340364 hsa-miR-381-5p 0 1 0
chr6:126340178|126340364 hsa-miR-4632-3p 1 0 0
chr6:126340178|126340364 hsa-miR-624-5p 0 1 0
chr6:126340178|126340364 hsa-miR-196b-3p 0 1 0
chr6:126340178|126340364 hsa-miR-5585-5p 0 1 0
chr6:126340178|126340364 hsa-miR-6788-5p 0 1 0
chr6:126340178|126340364 hsa-miR-4726-5p 0 1 0
chr6:126340178|126340364 hsa-miR-4749-5p 1 0 0
chr6:126340178|126340364 hsa-miR-6777-5p 1 0 0
chr6:126340178|126340364 hsa-miR-6889-5p 1 1 0
chr6:126340178|126340364 hsa-miR-6885-5p 1 1 0
chr6:126340178|126340364 hsa-miR-30c-1-3p 0 1 0
chr6:126340178|126340364 hsa-miR-2682-3p 1 0 0
chr6:126340178|126340364 hsa-miR-6791-5p 1 0 0
chr6:126340178|126340364 hsa-miR-342-5p 0 1 0
chr6:126340178|126340364 hsa-miR-4723-3p 0 1 0
chr6:126340178|126340364 hsa-miR-6769b-3p 0 1 0
chr6:126340178|126340364 hsa-miR-103a-1-5p 1 0 0
chr6:126340178|126340364 hsa-miR-516b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:126340178|126340364
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MTERMALSTIVSQRKQIKRKAPRGFLKRVFKRKK
Nucleotide Sequence TTGACAGAGAGGATGGCGCTGTCGACCATAGTCTCCCAGAGGAAGCAGATAAAGCGGAAGGCTCCCCGTGGCTTTCTAAAGCGAGTCTTCAAGCGAAAGAAG
CircID chr6:126340178|126340364
ORF Type ORF2
Protein Length 59
Nucleotide Length 177
Protein Sequence MFSLAQCPRSLCAIQRAPRKLRQLVLDREDGAVDHSLPEEADKAEGSPWLSKASLQAKE
Nucleotide Sequence TTGTTTTCGCTGGCCCAGTGTCCCCGGAGCTTGTGTGCGATACAGAGAGCACCTCGGAAGCTGAGGCAGCTGGTACTTGACAGAGAGGATGGCGCTGTCGACCATAGTCTCCCAGAGGAAGCAGATAAAGCGGAAGGCTCCCCGTGGCTTTCTAAAGCGAGTCTTCAAGCGAAAGAA
CircID chr6:126340178|126340364
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MSSTSCLSFRGALCIAHKLRGHWASENNPV
Nucleotide Sequence CTGTCAAGTACCAGCTGCCTCAGCTTCCGAGGTGCTCTCTGTATCGCACACAAGCTCCGGGGACACTGGGCCAGCGAAAACAATCCGGTC
CircID chr6:126340178|126340364
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MLPLGDYGRQRHPLCQVPAASASEVLSVSHTSSGDTGPAKTIRS
Nucleotide Sequence CTGCTTCCTCTGGGAGACTATGGTCGACAGCGCCATCCTCTCTGTCAAGTACCAGCTGCCTCAGCTTCCGAGGTGCTCTCTGTATCGCACACAAGCTCCGGGGACACTGGGCCAGCGAAAACAATCCGGTCC
CircID chr6:126340178|126340364
ORF Type ORF5
Protein Length 58
Nucleotide Length 174
Protein Sequence MKTRFRKPRGAFRFICFLWETMVDSAILSVKYQLPQLPRCSLYRTQAPGTLGQRKQSG
Nucleotide Sequence TTGAAGACTCGCTTTAGAAAGCCACGGGGAGCCTTCCGCTTTATCTGCTTCCTCTGGGAGACTATGGTCGACAGCGCCATCCTCTCTGTCAAGTACCAGCTGCCTCAGCTTCCGAGGTGCTCTCTGTATCGCACACAAGCTCCGGGGACACTGGGCCAGCGAAAACAATCCGGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab