CircRNA Information

General Information
circRNA Basic Information
CircID chr6:131609141|131609303
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGTCCATCGCTACACCACCTTCTTTCTCCATGTGGACATTAGCATTTTTCCAACTTGCATATGATGATGCCATTCTCCTCTGCATTGCCTCCAAAACAAAATCTAAACTCCTTAGAACAGGCACATGGCCATTCAAAGTTCTCCATGTCTGCTCTTGCTTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:131609141|131609303 hsa-miR-146a-5p 0 0 1
chr6:131609141|131609303 hsa-miR-146a-3p 0 0 1
chr6:131609141|131609303 hsa-miR-335-5p 0 0 1
chr6:131609141|131609303 hsa-miR-335-3p 0 0 1
chr6:131609141|131609303 hsa-miR-650 1 0 1
chr6:131609141|131609303 hsa-miR-455-5p 0 0 1
chr6:131609141|131609303 hsa-miR-146b-5p 0 1 1
chr6:131609141|131609303 hsa-miR-550 0 0 1
chr6:131609141|131609303 hsa-miR-768-5p 0 0 1
chr6:131609141|131609303 hsa-miR-658 1 0 0
chr6:131609141|131609303 hsa-miR-2278 1 0 0
chr6:131609141|131609303 hsa-miR-3148 0 1 0
chr6:131609141|131609303 hsa-miR-3185 1 0 0
chr6:131609141|131609303 hsa-miR-4270 1 0 0
chr6:131609141|131609303 hsa-miR-3612 1 1 0
chr6:131609141|131609303 hsa-miR-3911 1 0 0
chr6:131609141|131609303 hsa-miR-4462 1 0 0
chr6:131609141|131609303 hsa-miR-4533 1 0 0
chr6:131609141|131609303 hsa-miR-4642 0 1 0
chr6:131609141|131609303 hsa-miR-4644 1 0 0
chr6:131609141|131609303 hsa-miR-4647 1 0 0
chr6:131609141|131609303 hsa-miR-4689 1 0 0
chr6:131609141|131609303 hsa-miR-4692 1 0 0
chr6:131609141|131609303 hsa-miR-4739 1 0 0
chr6:131609141|131609303 hsa-miR-5192 1 0 0
chr6:131609141|131609303 hsa-miR-5739 1 0 0
chr6:131609141|131609303 hsa-miR-6081 1 0 0
chr6:131609141|131609303 hsa-miR-6124 1 0 0
chr6:131609141|131609303 hsa-miR-6127 1 0 0
chr6:131609141|131609303 hsa-miR-8085 1 0 0
chr6:131609141|131609303 hsa-miR-10226 0 1 0
chr6:131609141|131609303 hsa-miR-12119 1 0 0
chr6:131609141|131609303 hsa-miR-4433b-3p 1 0 0
chr6:131609141|131609303 hsa-miR-6894-5p 1 0 0
chr6:131609141|131609303 hsa-miR-6510-5p 1 0 0
chr6:131609141|131609303 hsa-miR-766-5p 1 0 0
chr6:131609141|131609303 hsa-miR-6515-5p 1 0 0
chr6:131609141|131609303 hsa-miR-4695-5p 1 0 0
chr6:131609141|131609303 hsa-miR-4653-3p 1 0 0
chr6:131609141|131609303 hsa-miR-4722-5p 1 0 0
chr6:131609141|131609303 hsa-miR-6727-5p 1 0 0
chr6:131609141|131609303 hsa-miR-3187-3p 0 1 0
chr6:131609141|131609303 hsa-miR-6760-5p 1 0 0
chr6:131609141|131609303 hsa-miR-2467-3p 1 1 0
chr6:131609141|131609303 hsa-miR-3150b-3p 1 0 0
chr6:131609141|131609303 hsa-miR-1226-5p 1 0 0
chr6:131609141|131609303 hsa-miR-6740-5p 1 0 0
chr6:131609141|131609303 hsa-miR-877-5p 1 0 0
chr6:131609141|131609303 hsa-miR-4717-3p 1 0 0
chr6:131609141|131609303 hsa-miR-6847-5p 1 1 0
chr6:131609141|131609303 hsa-miR-3162-5p 1 0 0
chr6:131609141|131609303 hsa-miR-550b-2-5p 1 1 0
chr6:131609141|131609303 hsa-miR-3120-3p 1 0 0
chr6:131609141|131609303 hsa-miR-490-5p 1 0 0
chr6:131609141|131609303 hsa-miR-6851-5p 1 0 0
chr6:131609141|131609303 hsa-miR-6722-3p 1 0 0
chr6:131609141|131609303 hsa-miR-6797-5p 1 0 0
chr6:131609141|131609303 hsa-miR-328-5p 1 0 0
chr6:131609141|131609303 hsa-miR-4632-5p 1 0 0
chr6:131609141|131609303 hsa-miR-6858-5p 1 0 0
chr6:131609141|131609303 hsa-miR-6885-5p 1 0 0
chr6:131609141|131609303 hsa-miR-365a-5p 1 0 0
chr6:131609141|131609303 hsa-miR-6731-5p 1 0 0
chr6:131609141|131609303 hsa-miR-7843-5p 1 0 0
chr6:131609141|131609303 hsa-miR-6855-5p 1 0 0
chr6:131609141|131609303 hsa-miR-4716-3p 1 0 0
chr6:131609141|131609303 hsa-miR-550a-3-5p 1 1 0
chr6:131609141|131609303 hsa-miR-550a-5p 1 1 0
chr6:131609141|131609303 hsa-miR-3619-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:131609141|131609303
ORF Type ORF1
Protein Length 54
Nucleotide Length 162
Protein Sequence LSIATPPSFSMWTLAFFQLAYDDAILLCIASKTKSKLLRTGTWPFKVLHVCSCF
Nucleotide Sequence CTGTCCATCGCTACACCACCTTCTTTCTCCATGTGGACATTAGCATTTTTCCAACTTGCATATGATGATGCCATTCTCCTCTGCATTGCCTCCAAAACAAAATCTAAACTCCTTAGAACAGGCACATGGCCATTCAAAGTTCTCCATGTCTGCTCTTGCTTT
CircID chr6:131609141|131609303
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MHMMMPFSSALPPKQNLNSLEQAHGHSKFSMSALAF
Nucleotide Sequence TTGCATATGATGATGCCATTCTCCTCTGCATTGCCTCCAAAACAAAATCTAAACTCCTTAGAACAGGCACATGGCCATTCAAAGTTCTCCATGTCTGCTCTTGCTTTC
CircID chr6:131609141|131609303
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MFWRQCRGEWHHHMQVGKMLMSTWRKKVV
Nucleotide Sequence TTGTTTTGGAGGCAATGCAGAGGAGAATGGCATCATCATATGCAAGTTGGAAAAATGCTAATGTCCACATGGAGAAAGAAGGTGGTGTAG
CircID chr6:131609141|131609303
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MENFEWPCACSKEFRFCFGGNAEENGIIICKLEKC
Nucleotide Sequence ATGGAGAACTTTGAATGGCCATGTGCCTGTTCTAAGGAGTTTAGATTTTGTTTTGGAGGCAATGCAGAGGAGAATGGCATCATCATATGCAAGTTGGAAAAATGCTAA
CircID chr6:131609141|131609303
ORF Type ORF5
Protein Length 45
Nucleotide Length 135
Protein Sequence MNGHVPVLRSLDFVLEAMQRRMASSYASWKNANVHMEKEGGVAMD
Nucleotide Sequence TTGAATGGCCATGTGCCTGTTCTAAGGAGTTTAGATTTTGTTTTGGAGGCAATGCAGAGGAGAATGGCATCATCATATGCAAGTTGGAAAAATGCTAATGTCCACATGGAGAAAGAAGGTGGTGTAGCGATGGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab