CircRNA Information

General Information
circRNA Basic Information
CircID chr6:13291732|13291864
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCTCCTTTGCCTGAGATCTCTGAGTGCCCCCATGTACTGCTCATATCTTTGCTGGGAAGCAGCAGTGAAGCCCTCCTGGATGTTCAGGTCCTGCAGTATTTGCATCAGAGTATCTGTGCCCAGAGCTCTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:13291732|13291864 hsa-miR-217-5p 0 0 1
chr6:13291732|13291864 hsa-miR-217-3p 0 0 1
chr6:13291732|13291864 hsa-miR-200b-5p 0 0 1
chr6:13291732|13291864 hsa-miR-200b-3p 0 0 1
chr6:13291732|13291864 hsa-miR-200c-5p 0 0 1
chr6:13291732|13291864 hsa-miR-200c-3p 0 0 1
chr6:13291732|13291864 hsa-miR-326 0 0 1
chr6:13291732|13291864 hsa-miR-429 0 0 1
chr6:13291732|13291864 hsa-miR-492 0 0 1
chr6:13291732|13291864 hsa-miR-545-5p 0 0 1
chr6:13291732|13291864 hsa-miR-545-3p 0 0 1
chr6:13291732|13291864 hsa-miR-612 1 1 1
chr6:13291732|13291864 hsa-miR-665 0 0 1
chr6:13291732|13291864 hsa-miR-1205 0 1 1
chr6:13291732|13291864 hsa-miR-1286 0 0 1
chr6:13291732|13291864 hsa-miR-1266-5p 0 0 1
chr6:13291732|13291864 hsa-miR-1266-3p 0 0 1
chr6:13291732|13291864 hsa-miR-556-5p 0 0 1
chr6:13291732|13291864 hsa-miR-330-5p 0 1 1
chr6:13291732|13291864 hsa-miR-509-3-5p 0 1 1
chr6:13291732|13291864 hsa-miR-509-5p 0 0 1
chr6:13291732|13291864 hsa-miR-516a-3p 0 0 1
chr6:13291732|13291864 hsa-miR-1285 0 0 1
chr6:13291732|13291864 hsa-miR-637 1 0 0
chr6:13291732|13291864 hsa-miR-760 1 0 0
chr6:13291732|13291864 hsa-miR-922 0 1 0
chr6:13291732|13291864 hsa-miR-3139 1 0 0
chr6:13291732|13291864 hsa-miR-3649 0 1 0
chr6:13291732|13291864 hsa-miR-4418 0 1 0
chr6:13291732|13291864 hsa-miR-4488 1 0 0
chr6:13291732|13291864 hsa-miR-6081 1 0 0
chr6:13291732|13291864 hsa-miR-6860 0 1 0
chr6:13291732|13291864 hsa-miR-8089 1 0 0
chr6:13291732|13291864 hsa-miR-12128 0 1 0
chr6:13291732|13291864 hsa-miR-6861-5p 1 0 0
chr6:13291732|13291864 hsa-miR-27a-5p 1 0 0
chr6:13291732|13291864 hsa-miR-769-5p 1 0 0
chr6:13291732|13291864 hsa-miR-6727-5p 1 0 0
chr6:13291732|13291864 hsa-miR-6721-5p 1 0 0
chr6:13291732|13291864 hsa-miR-486-3p 1 0 0
chr6:13291732|13291864 hsa-miR-1226-5p 1 0 0
chr6:13291732|13291864 hsa-miR-1184 1 0 0
chr6:13291732|13291864 hsa-miR-4742-5p 0 1 0
chr6:13291732|13291864 hsa-miR-3158-3p 0 1 0
chr6:13291732|13291864 hsa-miR-6837-3p 0 1 0
chr6:13291732|13291864 hsa-miR-506-5p 0 1 0
chr6:13291732|13291864 hsa-miR-6841-5p 1 0 0
chr6:13291732|13291864 hsa-miR-1233-5p 0 1 0
chr6:13291732|13291864 hsa-miR-6726-5p 1 0 0
chr6:13291732|13291864 hsa-miR-6803-5p 1 0 0
chr6:13291732|13291864 hsa-miR-5189-5p 1 1 0
chr6:13291732|13291864 hsa-miR-1237-5p 1 0 0
chr6:13291732|13291864 hsa-miR-328-5p 1 0 0
chr6:13291732|13291864 hsa-miR-6795-5p 1 0 0
chr6:13291732|13291864 hsa-miR-6846-5p 1 0 0
chr6:13291732|13291864 hsa-miR-6848-5p 1 0 0
chr6:13291732|13291864 hsa-miR-6887-5p 1 0 0
chr6:13291732|13291864 hsa-miR-4723-5p 1 0 0
chr6:13291732|13291864 hsa-miR-6885-5p 1 1 0
chr6:13291732|13291864 hsa-miR-939-5p 1 0 0
chr6:13291732|13291864 hsa-miR-6529-5p 0 1 0
chr6:13291732|13291864 hsa-miR-10394-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr6:13291732|13291864
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MPEISECPHVLLISLLGSSSEALLDVQVLQYLHQSICAQSSH
Nucleotide Sequence TTGCCTGAGATCTCTGAGTGCCCCCATGTACTGCTCATATCTTTGCTGGGAAGCAGCAGTGAAGCCCTCCTGGATGTTCAGGTCCTGCAGTATTTGCATCAGAGTATCTGTGCCCAGAGCTCTCAC

CircID chr6:13291732|13291864
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MRSLSAPMYCSYLCWEAAVKPSWMFRSCSICIRVSVPRAL
Nucleotide Sequence CTGAGATCTCTGAGTGCCCCCATGTACTGCTCATATCTTTGCTGGGAAGCAGCAGTGAAGCCCTCCTGGATGTTCAGGTCCTGCAGTATTTGCATCAGAGTATCTGTGCCCAGAGCTCTC

CircID chr6:13291732|13291864
ORF Type ORF3
Protein Length 41
Nucleotide Length 123
Protein Sequence MGTDTLMQILQDLNIQEGFTAASQQRYEQYMGALRDLRQRR
Nucleotide Sequence CTGGGCACAGATACTCTGATGCAAATACTGCAGGACCTGAACATCCAGGAGGGCTTCACTGCTGCTTCCCAGCAAAGATATGAGCAGTACATGGGGGCACTCAGAGATCTCAGGCAAAGGAGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites