CircRNA Information

General Information
circRNA Basic Information
CircID chr6:135394776|135438498
Strand -
CircType exon
Host Gene ENSG00000135541.20;
Algorism find_circ;CIRI2;DCC;
Sequence TATATGAAATTCCTTCTGGACGTTTCATGAGAGAATTGTGTGGCCACCTCAATATCATTTATGATCTTTCCTGGTCAAAAGATGATCACTACATCCTTACTTCATCATCTGATGGCACTGCCAGTATTGTGAAAGCATTAACTGAGTGAAAAGAGAAGCATGTGGCTAGCATCAAAATGACAAGGAGAGTTTTGAAAGAGGATATGGAAAAATGAAATAAACAATACAAATACTTTCAGAGTTTTACCTCATCCTTCTTTTGTTTACACGGCTAAATTCCATCCAGCTGTAAGAGAGCTAGTAGTTACAGGATGCTATGATTCCATGATACGGATATGGAAAGTTGAGATGAGAGAAGATTCTGCCATATTGGTCCGACAGTTTGATGTTCACAAAAGTTTTATCAACTCACTTTGTTTTGATACTGAAGGTCATCATATGTATTCAGGAGATTGTACAGGGGTGATTGTTGTTTGGAATACCTATGTCAAGATTAATGATTTGGAACATTCAGTGCACCACTGGACTATAAATAAGGAAATTAAAGAAACTGAGTTTAAGGGAATTCCAATAAGTTATTTGGAGATTCATCCCAATGGAAAACGTTTGTTAATCCATACCAAAGACAGTACTTTGAGAATTATGGATCTCCGGATATTAGTAGCAAGGAAGTTTGTAGGAGCAGCAAATTATCGGGAGAAGATTCATAGTACTTTGACTCCATGTGGGACTTTTCTGTTTGCTGGAAGTGAGGATGGTATAGTGTATGTTTGGAACCCAGAAACAGGAGAACAAGTAGCCATGTATTCTGACTTGCCATTCAAGTCACCCATTCGAGACATTTCTTATCATCCATTTGAAAATATGGTTGCATTCTGTGCATTTGGGCAAAATGAGCCAATTCTTCTGTATATTTACGATTTCCATGTTGCCCAGCAGGAGGCTGAAATGTTCAAACGCTACAATGGAACATTTCCATTACCTGGAATACACCAAAGTCAAGATGCCCTATGTACCTGTCCAAAACTACCCCATCAAGGCTCTTTTCAGATTGATGAATTTGTCCACACTGAAAGTTCTTCAACGAAGATGCAGCTAGTAAAACAGAGGCTTGAAACTGTCACAGAGGTGATACGTTCCTGTGCTGCAAAAGTCAACAAAAATCTCTCATTTACTTCACCACCAGCAGTTTCCTCACAACAGTCTAAGTTAAAGCAGTCAAACATGCTGACCGCTCAAGAGATTCTACATCAGTTTGGTTTCACTCAGACCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:135394776|135438498 hsa-miR-22-5p 0 1 1
chr6:135394776|135438498 hsa-miR-223-5p 0 1 1
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:135394776|135438498
ORF Type ORF1
Protein Length 316
Nucleotide Length 948
Protein Sequence MIRIWKVEMREDSAILVRQFDVHKSFINSLCFDTEGHHMYSGDCTGVIVVWNTYVKINDLEHSVHHWTINKEIKETEFKGIPISYLEIHPNGKRLLIHTKDSTLRIMDLRILVARKFVGAANYREKIHSTLTPCGTFLFAGSEDGIVYVWNPETGEQVAMYSDLPFKSPIRDISYHPFENMVAFCAFGQNEPILLYIYDFHVAQQEAEMFKRYNGTFPLPGIHQSQDALCTCPKLPHQGSFQIDEFVHTESSSTKMQLVKQRLETVTEVIRSCAAKVNKNLSFTSPPAVSSQQSKLKQSNMLTAQEILHQFGFTQT
Nucleotide Sequence ATGATACGGATATGGAAAGTTGAGATGAGAGAAGATTCTGCCATATTGGTCCGACAGTTTGATGTTCACAAAAGTTTTATCAACTCACTTTGTTTTGATACTGAAGGTCATCATATGTATTCAGGAGATTGTACAGGGGTGATTGTTGTTTGGAATACCTATGTCAAGATTAATGATTTGGAACATTCAGTGCACCACTGGACTATAAATAAGGAAATTAAAGAAACTGAGTTTAAGGGAATTCCAATAAGTTATTTGGAGATTCATCCCAATGGAAAACGTTTGTTAATCCATACCAAAGACAGTACTTTGAGAATTATGGATCTCCGGATATTAGTAGCAAGGAAGTTTGTAGGAGCAGCAAATTATCGGGAGAAGATTCATAGTACTTTGACTCCATGTGGGACTTTTCTGTTTGCTGGAAGTGAGGATGGTATAGTGTATGTTTGGAACCCAGAAACAGGAGAACAAGTAGCCATGTATTCTGACTTGCCATTCAAGTCACCCATTCGAGACATTTCTTATCATCCATTTGAAAATATGGTTGCATTCTGTGCATTTGGGCAAAATGAGCCAATTCTTCTGTATATTTACGATTTCCATGTTGCCCAGCAGGAGGCTGAAATGTTCAAACGCTACAATGGAACATTTCCATTACCTGGAATACACCAAAGTCAAGATGCCCTATGTACCTGTCCAAAACTACCCCATCAAGGCTCTTTTCAGATTGATGAATTTGTCCACACTGAAAGTTCTTCAACGAAGATGCAGCTAGTAAAACAGAGGCTTGAAACTGTCACAGAGGTGATACGTTCCTGTGCTGCAAAAGTCAACAAAAATCTCTCATTTACTTCACCACCAGCAGTTTCCTCACAACAGTCTAAGTTAAAGCAGTCAAACATGCTGACCGCTCAAGAGATTCTACATCAGTTTGGTTTCACTCAGACC
CircID chr6:135394776|135438498
ORF Type ORF2
Protein Length 69
Nucleotide Length 207
Protein Sequence MSQFFCIFTISMLPSRRLKCSNATMEHFHYLEYTKVKMPYVPVQNYPIKALFRLMNLSTLKVLQRRCS*
Nucleotide Sequence ATGAGCCAATTCTTCTGTATATTTACGATTTCCATGTTGCCCAGCAGGAGGCTGAAATGTTCAAACGCTACAATGGAACATTTCCATTACCTGGAATACACCAAAGTCAAGATGCCCTATGTACCTGTCCAAAACTACCCCATCAAGGCTCTTTTCAGATTGATGAATTTGTCCACACTGAAAGTTCTTCAACGAAGATGCAGCTAG
CircID chr6:135394776|135438498
ORF Type ORF3
Protein Length 60
Nucleotide Length 180
Protein Sequence MFDCFNLDCCEETAGGEVNERFLLTFAAQERITSVTVSSLCFTSCIFVEELSVWTNSSI*
Nucleotide Sequence ATGTTTGACTGCTTTAACTTAGACTGTTGTGAGGAAACTGCTGGTGGTGAAGTAAATGAGAGATTTTTGTTGACTTTTGCAGCACAGGAACGTATCACCTCTGTGACAGTTTCAAGCCTCTGTTTTACTAGCTGCATCTTCGTTGAAGAACTTTCAGTGTGGACAAATTCATCAATCTGA
CircID chr6:135394776|135438498
ORF Type ORF4
Protein Length 60
Nucleotide Length 180
Protein Sequence MASQNTWLLVLLFLGSKHTLYHPHFQQTEKSHMESKYYESSPDNLLLLQTSLLLISGDP*
Nucleotide Sequence ATGGCAAGTCAGAATACATGGCTACTTGTTCTCCTGTTTCTGGGTTCCAAACATACACTATACCATCCTCACTTCCAGCAAACAGAAAAGTCCCACATGGAGTCAAAGTACTATGAATCTTCTCCCGATAATTTGCTGCTCCTACAAACTTCCTTGCTACTAATATCCGGAGATCCATAA
CircID chr6:135394776|135438498
ORF Type ORF5
Protein Length 46
Nucleotide Length 138
Protein Sequence MSRMGDLNGKSEYMATCSPVSGFQTYTIPSSLPANRKVPHGVKVL*
Nucleotide Sequence ATGTCTCGAATGGGTGACTTGAATGGCAAGTCAGAATACATGGCTACTTGTTCTCCTGTTTCTGGGTTCCAAACATACACTATACCATCCTCACTTCCAGCAAACAGAAAAGTCCCACATGGAGTCAAAGTACTATGA
CircID chr6:135394776|135438498
ORF Type ORF6
Protein Length 41
Nucleotide Length 123
Protein Sequence MRELCGHLNIIYDLSWSKDDHYILTSSSDGTASIVKALTE*
Nucleotide Sequence ATGAGAGAATTGTGTGGCCACCTCAATATCATTTATGATCTTTCCTGGTCAAAAGATGATCACTACATCCTTACTTCATCATCTGATGGCACTGCCAGTATTGTGAAAGCATTAACTGAGTGA
CircID chr6:135394776|135438498
ORF Type ORF7
Protein Length 34
Nucleotide Length 102
Protein Sequence MEIVNIQKNWLILPKCTECNHIFKWMIRNVSNG*
Nucleotide Sequence ATGGAAATCGTAAATATACAGAAGAATTGGCTCATTTTGCCCAAATGCACAGAATGCAACCATATTTTCAAATGGATGATAAGAAATGTCTCGAATGGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr6:135394776|135438498 NOP56 1 0 0
chr6:135394776|135438498 FUS 2 0 2
chr6:135394776|135438498 FAM120A 0 0 3
chr6:135394776|135438498 CNBP 0 0 1
chr6:135394776|135438498 PRPF8 0 1 0
chr6:135394776|135438498 TAF15 1 2 0
chr6:135394776|135438498 FMR1 0 0 2
chr6:135394776|135438498 ELAVL1 2 1 0
chr6:135394776|135438498 SRSF7 0 0 1
chr6:135394776|135438498 SRSF1 0 0 2
chr6:135394776|135438498 NOP58 0 0 8
chr6:135394776|135438498 U2AF2 6 13 5
chr6:135394776|135438498 DDX54 0 0 20
chr6:135394776|135438498 SF3A3 2 0 0
chr6:135394776|135438498 PTBP1 1 0 0
chr6:135394776|135438498 HNRNPC 0 1 0
chr6:135394776|135438498 KHSRP 0 2 0
chr6:135394776|135438498 HNRNPA1 0 3 0
chr6:135394776|135438498 LARP7 0 0 1
chr6:135394776|135438498 SMNDC1 0 0 1
chr6:135394776|135438498 ACIN1 0 0 6
chr6:135394776|135438498 LIN28B 0 0 5
chr6:135394776|135438498 FXR1 0 0 1
chr6:135394776|135438498 IGF2BP1 0 0 8
chr6:135394776|135438498 IGF2BP3 0 0 3
chr6:135394776|135438498 IGF2BP2 0 1 12
chr6:135394776|135438498 YTHDC1 0 0 1
chr6:135394776|135438498 BUD13 0 0 1
chr6:135394776|135438498 RBFOX2 1 0 0
chr6:135394776|135438498 RBM47 0 1 1
chr6:135394776|135438498 CSTF2T 0 0 6
chr6:135394776|135438498 TIA1 0 1 0
chr6:135394776|135438498 RBM22 0 2 0
chr6:135394776|135438498 TIAL1 0 2 0
chr6:135394776|135438498 FBL 0 1 2
chr6:135394776|135438498 EWSR1 0 1 0
chr6:135394776|135438498 EIF4A3 1 4 18
chr6:135394776|135438498 AGO2 1 0 5
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab