CircRNA Information

General Information
circRNA Basic Information
CircID chr6:13615823|13615947
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCGTCCAACTAAAGTACTGCCGCGCCCGGCCCGAGCATCTTTCCACCACTGTCAGAGGCAATCTTGGTGACTGTTTCCCCACTCCAATATCCTGCCAACCCAAATTACATCCACCATAGGAATT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:13615823|13615947 hsa-miR-212-5p 0 0 1
chr6:13615823|13615947 hsa-miR-212-3p 0 0 1
chr6:13615823|13615947 hsa-miR-122-5p 0 0 1
chr6:13615823|13615947 hsa-miR-122-3p 0 0 1
chr6:13615823|13615947 hsa-miR-132-5p 0 0 1
chr6:13615823|13615947 hsa-miR-132-3p 0 0 1
chr6:13615823|13615947 hsa-miR-380-5p 0 0 1
chr6:13615823|13615947 hsa-miR-380-3p 0 0 1
chr6:13615823|13615947 hsa-miR-491-5p 0 1 1
chr6:13615823|13615947 hsa-miR-423-3p 1 0 1
chr6:13615823|13615947 hsa-miR-337-3p 0 0 1
chr6:13615823|13615947 hsa-miR-1207-5p 1 0 1
chr6:13615823|13615947 hsa-miR-449a 1 0 0
chr6:13615823|13615947 hsa-miR-608 1 0 0
chr6:13615823|13615947 hsa-miR-663a 1 0 0
chr6:13615823|13615947 hsa-miR-762 1 0 0
chr6:13615823|13615947 hsa-miR-1182 1 0 0
chr6:13615823|13615947 hsa-miR-1286 1 0 0
chr6:13615823|13615947 hsa-miR-1268a 1 0 0
chr6:13615823|13615947 hsa-miR-2110 1 1 0
chr6:13615823|13615947 hsa-miR-2861 1 0 0
chr6:13615823|13615947 hsa-miR-3178 1 1 0
chr6:13615823|13615947 hsa-miR-3181 1 0 0
chr6:13615823|13615947 hsa-miR-3196 1 0 0
chr6:13615823|13615947 hsa-miR-4259 1 0 0
chr6:13615823|13615947 hsa-miR-4261 0 1 0
chr6:13615823|13615947 hsa-miR-3621 1 0 0
chr6:13615823|13615947 hsa-miR-1268b 1 0 0
chr6:13615823|13615947 hsa-miR-4467 1 0 0
chr6:13615823|13615947 hsa-miR-4479 1 1 0
chr6:13615823|13615947 hsa-miR-4486 1 0 0
chr6:13615823|13615947 hsa-miR-4492 1 0 0
chr6:13615823|13615947 hsa-miR-4498 1 0 0
chr6:13615823|13615947 hsa-miR-4505 1 0 0
chr6:13615823|13615947 hsa-miR-4507 1 0 0
chr6:13615823|13615947 hsa-miR-4523 1 0 0
chr6:13615823|13615947 hsa-miR-4526 1 0 0
chr6:13615823|13615947 hsa-miR-4533 1 0 0
chr6:13615823|13615947 hsa-miR-1587 1 0 0
chr6:13615823|13615947 hsa-miR-3978 1 1 0
chr6:13615823|13615947 hsa-miR-4651 1 0 0
chr6:13615823|13615947 hsa-miR-4736 1 0 0
chr6:13615823|13615947 hsa-miR-5572 1 0 0
chr6:13615823|13615947 hsa-miR-5787 1 0 0
chr6:13615823|13615947 hsa-miR-7150 1 0 0
chr6:13615823|13615947 hsa-miR-4433b-3p 1 0 0
chr6:13615823|13615947 hsa-miR-92a-1-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6836-3p 1 0 0
chr6:13615823|13615947 hsa-miR-6894-5p 1 0 0
chr6:13615823|13615947 hsa-miR-4687-3p 1 0 0
chr6:13615823|13615947 hsa-miR-6728-5p 1 0 0
chr6:13615823|13615947 hsa-miR-8071 1 0 0
chr6:13615823|13615947 hsa-miR-6880-5p 1 0 0
chr6:13615823|13615947 hsa-miR-4722-5p 1 0 0
chr6:13615823|13615947 hsa-miR-3064-5p 1 0 0
chr6:13615823|13615947 hsa-miR-3677-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6820-5p 1 1 0
chr6:13615823|13615947 hsa-miR-8069 1 0 0
chr6:13615823|13615947 hsa-miR-6772-5p 1 0 0
chr6:13615823|13615947 hsa-miR-656-5p 1 1 0
chr6:13615823|13615947 hsa-miR-6782-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6786-5p 1 0 0
chr6:13615823|13615947 hsa-miR-7109-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6740-5p 1 0 0
chr6:13615823|13615947 hsa-miR-3944-3p 1 0 0
chr6:13615823|13615947 hsa-miR-1229-5p 1 0 0
chr6:13615823|13615947 hsa-miR-4640-5p 1 0 0
chr6:13615823|13615947 hsa-miR-4764-5p 1 0 0
chr6:13615823|13615947 hsa-miR-1228-5p 1 0 0
chr6:13615823|13615947 hsa-miR-296-3p 1 0 0
chr6:13615823|13615947 hsa-miR-92b-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6749-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6501-5p 1 0 0
chr6:13615823|13615947 hsa-miR-4743-5p 1 0 0
chr6:13615823|13615947 hsa-miR-4787-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6781-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6877-5p 1 0 0
chr6:13615823|13615947 hsa-miR-194-3p 1 0 0
chr6:13615823|13615947 hsa-miR-7112-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6499-5p 0 1 0
chr6:13615823|13615947 hsa-miR-4750-5p 1 0 0
chr6:13615823|13615947 hsa-miR-34a-5p 1 1 0
chr6:13615823|13615947 hsa-miR-2277-5p 1 0 0
chr6:13615823|13615947 hsa-miR-10400-5p 1 0 0
chr6:13615823|13615947 hsa-miR-4763-3p 1 0 0
chr6:13615823|13615947 hsa-miR-6769b-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6812-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6816-5p 1 0 0
chr6:13615823|13615947 hsa-miR-5001-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6737-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6756-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6769a-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6803-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6819-5p 1 0 0
chr6:13615823|13615947 hsa-miR-7110-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6722-3p 1 0 0
chr6:13615823|13615947 hsa-miR-6797-5p 1 0 0
chr6:13615823|13615947 hsa-miR-3620-5p 1 0 0
chr6:13615823|13615947 hsa-miR-4728-5p 1 0 0
chr6:13615823|13615947 hsa-miR-5189-5p 1 0 0
chr6:13615823|13615947 hsa-miR-10396b-5p 1 0 0
chr6:13615823|13615947 hsa-miR-449c-5p 1 0 0
chr6:13615823|13615947 hsa-miR-4745-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6883-5p 1 0 0
chr6:13615823|13615947 hsa-miR-1238-5p 1 0 0
chr6:13615823|13615947 hsa-miR-10394-3p 1 1 0
chr6:13615823|13615947 hsa-miR-3940-5p 1 1 0
chr6:13615823|13615947 hsa-miR-6877-3p 1 0 0
chr6:13615823|13615947 hsa-miR-3679-5p 1 0 0
chr6:13615823|13615947 hsa-miR-6724-5p 1 0 0
chr6:13615823|13615947 hsa-miR-9851-5p 1 0 0
chr6:13615823|13615947 hsa-miR-33b-3p 1 0 0
chr6:13615823|13615947 hsa-miR-449b-5p 1 0 0
chr6:13615823|13615947 hsa-miR-34c-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:13615823|13615947
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MSEAILVTVSPLQYPANPNYIHHRN
Nucleotide Sequence CTGTCAGAGGCAATCTTGGTGACTGTTTCCCCACTCCAATATCCTGCCAACCCAAATTACATCCACCATAGGAAT
CircID chr6:13615823|13615947
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MGWQDIGVGKQSPRLPLTVVERCSGRARQYFSWT
Nucleotide Sequence TTGGGTTGGCAGGATATTGGAGTGGGGAAACAGTCACCAAGATTGCCTCTGACAGTGGTGGAAAGATGCTCGGGCCGGGCGCGGCAGTACTTTAGTTGGACG
CircID chr6:13615823|13615947
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MAGYWSGETVTKIASDSGGKMLGPGAAVL
Nucleotide Sequence TTGGCAGGATATTGGAGTGGGGAAACAGTCACCAAGATTGCCTCTGACAGTGGTGGAAAGATGCTCGGGCCGGGCGCGGCAGTACTTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab