CircRNA Information

General Information
circRNA Basic Information
CircID chr6:138092046|138092216
Strand +
CircType exon
Host Gene ENSG00000112378.11;
Algorism CIRI2;
Sequence CTTCACCCTTCATGCCAACCCTGCTGTCACTTACATCTATAACTGGGCCTACGGCTTTGGGTGGGCAGCCACGATTATCCTGATTGGCTGTGCCTTCTTCTTCTGCTGCCTCCCCAACTACGAAGATGACCTTCTGGGCAATGCCAAGCCCAGGTACTTCTACACATCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:138092046|138092216 hsa-miR-214-5p 0 0 1
chr6:138092046|138092216 hsa-miR-214-3p 0 0 1
chr6:138092046|138092216 hsa-miR-493-5p 0 0 1
chr6:138092046|138092216 hsa-miR-493-3p 0 0 1
chr6:138092046|138092216 hsa-miR-506-5p 0 0 1
chr6:138092046|138092216 hsa-miR-506-3p 0 0 1
chr6:138092046|138092216 hsa-miR-604 0 0 1
chr6:138092046|138092216 hsa-miR-619-5p 0 0 1
chr6:138092046|138092216 hsa-miR-619-3p 0 0 1
chr6:138092046|138092216 hsa-miR-647 0 0 1
chr6:138092046|138092216 hsa-miR-650 1 1 1
chr6:138092046|138092216 hsa-miR-298 0 1 1
chr6:138092046|138092216 hsa-miR-922 0 1 1
chr6:138092046|138092216 hsa-miR-939-5p 0 0 1
chr6:138092046|138092216 hsa-miR-939-3p 0 0 1
chr6:138092046|138092216 hsa-miR-1204 0 0 1
chr6:138092046|138092216 hsa-miR-1256 0 0 1
chr6:138092046|138092216 hsa-miR-1827 0 1 1
chr6:138092046|138092216 hsa-miR-296-3p 1 1 1
chr6:138092046|138092216 hsa-miR-576-3p 0 0 1
chr6:138092046|138092216 hsa-miR-542-3p 0 0 1
chr6:138092046|138092216 hsa-miR-124 0 0 1
chr6:138092046|138092216 hsa-miR-564 1 0 0
chr6:138092046|138092216 hsa-miR-761 0 1 0
chr6:138092046|138092216 hsa-miR-936 0 1 0
chr6:138092046|138092216 hsa-miR-940 1 0 0
chr6:138092046|138092216 hsa-miR-1183 1 0 0
chr6:138092046|138092216 hsa-miR-1295a 1 0 0
chr6:138092046|138092216 hsa-miR-3185 1 1 0
chr6:138092046|138092216 hsa-miR-4317 0 1 0
chr6:138092046|138092216 hsa-miR-3612 0 1 0
chr6:138092046|138092216 hsa-miR-3916 1 0 0
chr6:138092046|138092216 hsa-miR-3939 1 0 0
chr6:138092046|138092216 hsa-miR-378g 0 1 0
chr6:138092046|138092216 hsa-miR-4526 1 1 0
chr6:138092046|138092216 hsa-miR-4688 1 0 0
chr6:138092046|138092216 hsa-miR-6075 1 0 0
chr6:138092046|138092216 hsa-miR-6125 1 0 0
chr6:138092046|138092216 hsa-miR-6165 1 0 0
chr6:138092046|138092216 hsa-miR-6825-5p 1 1 0
chr6:138092046|138092216 hsa-miR-1236-5p 1 0 0
chr6:138092046|138092216 hsa-miR-3622a-5p 1 0 0
chr6:138092046|138092216 hsa-miR-4695-5p 1 1 0
chr6:138092046|138092216 hsa-miR-24-3p 1 0 0
chr6:138092046|138092216 hsa-miR-6806-5p 1 0 0
chr6:138092046|138092216 hsa-miR-7845-5p 1 0 0
chr6:138092046|138092216 hsa-miR-3605-5p 1 0 0
chr6:138092046|138092216 hsa-miR-3190-3p 1 0 0
chr6:138092046|138092216 hsa-miR-6770-5p 1 1 0
chr6:138092046|138092216 hsa-miR-486-3p 1 0 0
chr6:138092046|138092216 hsa-miR-6881-5p 1 0 0
chr6:138092046|138092216 hsa-miR-2467-3p 0 1 0
chr6:138092046|138092216 hsa-miR-3934-3p 1 0 0
chr6:138092046|138092216 hsa-miR-1226-5p 1 0 0
chr6:138092046|138092216 hsa-miR-4707-3p 0 1 0
chr6:138092046|138092216 hsa-miR-6823-5p 1 1 0
chr6:138092046|138092216 hsa-miR-4446-3p 1 0 0
chr6:138092046|138092216 hsa-miR-6824-5p 1 0 0
chr6:138092046|138092216 hsa-miR-6800-5p 1 1 0
chr6:138092046|138092216 hsa-miR-6895-5p 1 0 0
chr6:138092046|138092216 hsa-miR-1207-5p 1 0 0
chr6:138092046|138092216 hsa-miR-4763-3p 1 0 0
chr6:138092046|138092216 hsa-miR-6743-5p 1 0 0
chr6:138092046|138092216 hsa-miR-6763-5p 0 1 0
chr6:138092046|138092216 hsa-miR-6879-5p 1 0 0
chr6:138092046|138092216 hsa-miR-7111-5p 1 0 0
chr6:138092046|138092216 hsa-miR-328-5p 1 0 0
chr6:138092046|138092216 hsa-miR-6883-5p 1 0 0
chr6:138092046|138092216 hsa-miR-6887-5p 1 0 0
chr6:138092046|138092216 hsa-miR-6773-5p 1 0 0
chr6:138092046|138092216 hsa-miR-7843-5p 1 0 0
chr6:138092046|138092216 hsa-miR-6750-5p 1 0 0
chr6:138092046|138092216 hsa-miR-4667-5p 1 1 0
chr6:138092046|138092216 hsa-miR-6724-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr6:138092046|138092216
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MGLRLWVGSHDYPDWLCLLLLLPPQLRR
Nucleotide Sequence CTGGGCCTACGGCTTTGGGTGGGCAGCCACGATTATCCTGATTGGCTGTGCCTTCTTCTTCTGCTGCCTCCCCAACTACGAAGATGA
CircID chr6:138092046|138092216
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MIGCAFFFCCLPNYEDDLLGNAKPRYFYTS
Nucleotide Sequence CTGATTGGCTGTGCCTTCTTCTTCTGCTGCCTCCCCAACTACGAAGATGACCTTCTGGGCAATGCCAAGCCCAGGTACTTCTACACATCT
CircID chr6:138092046|138092216
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MAVPSSSAASPTTKMTFWAMPSPGTSTHL
Nucleotide Sequence TTGGCTGTGCCTTCTTCTTCTGCTGCCTCCCCAACTACGAAGATGACCTTCTGGGCAATGCCAAGCCCAGGTACTTCTACACATCTG
CircID chr6:138092046|138092216
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MCRSTWAWHCPEGHLRSWGGSRRRRHSQSG
Nucleotide Sequence ATGTGTAGAAGTACCTGGGCTTGGCATTGCCCAGAAGGTCATCTTCGTAGTTGGGGAGGCAGCAGAAGAAGAAGGCACAGCCAATCAGGATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab