CircRNA Information

General Information
circRNA Basic Information
CircID chr6:138339140|138339285
Strand -
CircType exon
Host Gene ENSG00000112379.8;
Algorism CIRI2;
Sequence AGCAGTACTTCTCAGAGGTATTTGCAGCTTGATGCAAAGTAGTCTCTAATGAGTAGGCATTCAGGTGGTTCTTCCCAGCAGGTGGAGAAGAAAGGGAGGAGATGAAGAACACTGAGAGGGGAGTGGCACCTTCCCAGGCTGCCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:138339140|138339285 hsa-miR-18a-5p 0 0 1
chr6:138339140|138339285 hsa-miR-18a-3p 0 0 1
chr6:138339140|138339285 hsa-miR-204-5p 0 0 1
chr6:138339140|138339285 hsa-miR-204-3p 0 0 1
chr6:138339140|138339285 hsa-miR-211-5p 0 0 1
chr6:138339140|138339285 hsa-miR-211-3p 0 0 1
chr6:138339140|138339285 hsa-miR-370-5p 0 0 1
chr6:138339140|138339285 hsa-miR-370-3p 0 0 1
chr6:138339140|138339285 hsa-miR-18b-5p 0 0 1
chr6:138339140|138339285 hsa-miR-18b-3p 0 0 1
chr6:138339140|138339285 hsa-miR-612 0 0 1
chr6:138339140|138339285 hsa-miR-661 0 0 1
chr6:138339140|138339285 hsa-miR-942-5p 0 0 1
chr6:138339140|138339285 hsa-miR-942-3p 0 0 1
chr6:138339140|138339285 hsa-miR-1227-5p 0 0 1
chr6:138339140|138339285 hsa-miR-1227-3p 0 0 1
chr6:138339140|138339285 hsa-miR-1303 0 0 1
chr6:138339140|138339285 hsa-miR-1253 0 0 1
chr6:138339140|138339285 hsa-miR-1278 0 0 1
chr6:138339140|138339285 hsa-miR-875-5p 0 0 1
chr6:138339140|138339285 hsa-miR-515-5p 0 0 1
chr6:138339140|138339285 hsa-miR-548b-3p 0 0 1
chr6:138339140|138339285 hsa-miR-1300 0 0 1
chr6:138339140|138339285 hsa-miR-1285 0 0 1
chr6:138339140|138339285 hsa-miR-934 0 1 0
chr6:138339140|138339285 hsa-miR-1976 1 0 0
chr6:138339140|138339285 hsa-miR-4268 1 0 0
chr6:138339140|138339285 hsa-miR-4279 1 1 0
chr6:138339140|138339285 hsa-miR-6860 0 1 0
chr6:138339140|138339285 hsa-miR-6749-3p 1 1 0
chr6:138339140|138339285 hsa-miR-4731-5p 1 1 0
chr6:138339140|138339285 hsa-miR-6747-3p 1 0 0
chr6:138339140|138339285 hsa-miR-3692-5p 0 1 0
chr6:138339140|138339285 hsa-miR-6875-3p 1 0 0
chr6:138339140|138339285 hsa-miR-6845-3p 1 1 0
chr6:138339140|138339285 hsa-miR-7113-3p 1 0 0
chr6:138339140|138339285 hsa-miR-3667-3p 1 0 0
chr6:138339140|138339285 hsa-miR-6809-3p 1 0 0
chr6:138339140|138339285 hsa-miR-7111-3p 1 1 0
chr6:138339140|138339285 hsa-miR-6830-3p 1 0 0
chr6:138339140|138339285 hsa-miR-6776-3p 0 1 0
chr6:138339140|138339285 hsa-miR-1236-3p 1 1 0
chr6:138339140|138339285 hsa-miR-6743-3p 1 0 0
chr6:138339140|138339285 hsa-miR-24-2-5p 0 1 0
chr6:138339140|138339285 hsa-miR-6887-3p 1 0 0
chr6:138339140|138339285 hsa-miR-6778-3p 1 0 0
chr6:138339140|138339285 hsa-miR-371a-3p 1 0 0
chr6:138339140|138339285 hsa-miR-6826-3p 1 1 0
chr6:138339140|138339285 hsa-miR-6886-3p 1 0 0
chr6:138339140|138339285 hsa-miR-6795-3p 1 0 0
chr6:138339140|138339285 hsa-miR-6777-3p 1 0 0
chr6:138339140|138339285 hsa-miR-6734-3p 1 0 0
chr6:138339140|138339285 hsa-miR-6515-3p 1 0 0
chr6:138339140|138339285 hsa-miR-1249-3p 1 0 0
chr6:138339140|138339285 hsa-miR-6729-3p 1 0 0
chr6:138339140|138339285 hsa-miR-589-5p 1 0 0
chr6:138339140|138339285 hsa-miR-7107-5p 0 1 0
chr6:138339140|138339285 hsa-miR-3127-3p 1 0 0
chr6:138339140|138339285 hsa-miR-4685-3p 1 1 0
chr6:138339140|138339285 hsa-miR-6754-3p 1 0 0
chr6:138339140|138339285 hsa-miR-4632-5p 1 0 0
chr6:138339140|138339285 hsa-miR-3187-5p 0 1 0
chr6:138339140|138339285 hsa-miR-3085-5p 0 1 0
chr6:138339140|138339285 hsa-miR-6791-3p 1 0 0
chr6:138339140|138339285 hsa-miR-4646-5p 0 1 0
chr6:138339140|138339285 hsa-miR-6792-3p 1 0 0
chr6:138339140|138339285 hsa-miR-4723-3p 1 0 0
chr6:138339140|138339285 hsa-miR-483-3p 1 0 0
chr6:138339140|138339285 hsa-miR-6769b-3p 1 0 0
chr6:138339140|138339285 hsa-miR-6891-3p 1 0 0
chr6:138339140|138339285 hsa-miR-4691-5p 1 0 0
chr6:138339140|138339285 hsa-miR-519e-3p 0 1 0
chr6:138339140|138339285 hsa-miR-5699-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:138339140|138339285
ORF Type ORF1
Protein Length 44
Nucleotide Length 135
Protein Sequence LGSLGRCHSPLSVLHLLPFFSTCWEEPPECLLIRDYFASSCKYL
Nucleotide Sequence CTGGGCAGCCTGGGAAGGTGCCACTCCCCTCTCAGTGTTCTTCATCTCCTCCCTTTCTTCTCCACCTGCTGGGAAGAACCACCTGAATGCCTACTCATTAGAGACTACTTTGCATCAAGCTGCAAATACCTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab