CircRNA Information

General Information
circRNA Basic Information
CircID chr6:144537582|144539443
Strand +
CircType exon
Host Gene ENSG00000152818.18;
Algorism find_circ;CIRI2;DCC;
Sequence GCTAAAAGGAGAAAGTAAGCAGGTGATGAAGTACAGGCATCAGCTAGATGAGATTATCTGTTGGTTAACAAAGGCTGAGCATGCTATGCAAAAGAGATCAACCACCGAATTGGGAGAAAACCTGCAAGAATTAAGAGACTTAACTCAAGAAATGGAAGTACATGCTGAAAAACTCAAATGGCTGAATAGAACTGAATTGGAGATGCTTTCAGATAAAAGTCTGAGTTTACCTGAAAGGGATAAAATTTCAGAAAGCTTAAGGACTGTAAATATGACATGGAATAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:144537582|144539443 hsa-miR-425-5p 0 0 1
chr6:144537582|144539443 hsa-miR-425-3p 0 0 1
chr6:144537582|144539443 hsa-miR-488-5p 0 0 1
chr6:144537582|144539443 hsa-miR-488-3p 0 0 1
chr6:144537582|144539443 hsa-miR-495-5p 0 0 1
chr6:144537582|144539443 hsa-miR-495-3p 0 0 1
chr6:144537582|144539443 hsa-miR-559 0 0 1
chr6:144537582|144539443 hsa-miR-577 0 1 1
chr6:144537582|144539443 hsa-miR-620 0 0 1
chr6:144537582|144539443 hsa-miR-888-5p 0 0 1
chr6:144537582|144539443 hsa-miR-888-3p 0 0 1
chr6:144537582|144539443 hsa-miR-548j-5p 0 0 1
chr6:144537582|144539443 hsa-miR-548j-3p 0 0 1
chr6:144537582|144539443 hsa-miR-548n 0 0 1
chr6:144537582|144539443 hsa-miR-1267 0 0 1
chr6:144537582|144539443 hsa-miR-1270 0 0 1
chr6:144537582|144539443 hsa-miR-216a-5p 0 1 1
chr6:144537582|144539443 hsa-miR-125a-3p 0 0 1
chr6:144537582|144539443 hsa-miR-513a-3p 0 0 1
chr6:144537582|144539443 hsa-miR-548b-5p 0 0 1
chr6:144537582|144539443 hsa-miR-548d-5p 0 0 1
chr6:144537582|144539443 hsa-miR-548c-5p 0 0 1
chr6:144537582|144539443 hsa-miR-548a-5p 0 0 1
chr6:144537582|144539443 hsa-miR-548i 0 0 1
chr6:144537582|144539443 hsa-miR-105 0 0 1
chr6:144537582|144539443 hsa-miR-219-2-3p 0 0 1
chr6:144537582|144539443 hsa-miR-548h 0 0 1
chr6:144537582|144539443 hsa-miR-1183 1 1 0
chr6:144537582|144539443 hsa-miR-3153 1 0 0
chr6:144537582|144539443 hsa-miR-3169 1 1 0
chr6:144537582|144539443 hsa-miR-1193 1 0 0
chr6:144537582|144539443 hsa-miR-3929 1 0 0
chr6:144537582|144539443 hsa-miR-4424 0 1 0
chr6:144537582|144539443 hsa-miR-4427 0 1 0
chr6:144537582|144539443 hsa-miR-4478 0 1 0
chr6:144537582|144539443 hsa-miR-4505 1 0 0
chr6:144537582|144539443 hsa-miR-4656 1 0 0
chr6:144537582|144539443 hsa-miR-4675 1 0 0
chr6:144537582|144539443 hsa-miR-4682 0 1 0
chr6:144537582|144539443 hsa-miR-5192 1 0 0
chr6:144537582|144539443 hsa-miR-5787 1 0 0
chr6:144537582|144539443 hsa-miR-8052 1 1 0
chr6:144537582|144539443 hsa-miR-12118 1 0 0
chr6:144537582|144539443 hsa-miR-4695-5p 1 0 0
chr6:144537582|144539443 hsa-miR-6746-5p 1 0 0
chr6:144537582|144539443 hsa-miR-1288-3p 1 0 0
chr6:144537582|144539443 hsa-miR-6760-5p 1 0 0
chr6:144537582|144539443 hsa-miR-30c-2-3p 0 1 0
chr6:144537582|144539443 hsa-miR-877-5p 1 0 0
chr6:144537582|144539443 hsa-miR-4743-5p 1 0 0
chr6:144537582|144539443 hsa-miR-4446-3p 1 1 0
chr6:144537582|144539443 hsa-miR-2276-3p 0 1 0
chr6:144537582|144539443 hsa-miR-6878-5p 1 1 0
chr6:144537582|144539443 hsa-miR-887-5p 0 1 0
chr6:144537582|144539443 hsa-miR-5197-3p 0 1 0
chr6:144537582|144539443 hsa-miR-3179 0 1 0
chr6:144537582|144539443 hsa-miR-5585-5p 0 1 0
chr6:144537582|144539443 hsa-miR-6775-5p 1 0 0
chr6:144537582|144539443 hsa-miR-6788-5p 1 1 0
chr6:144537582|144539443 hsa-miR-6862-5p 1 0 0
chr6:144537582|144539443 hsa-miR-6831-5p 1 0 0
chr6:144537582|144539443 hsa-miR-6511b-5p 1 0 0
chr6:144537582|144539443 hsa-miR-6856-5p 1 0 0
chr6:144537582|144539443 hsa-miR-3173-3p 1 1 0
chr6:144537582|144539443 hsa-miR-6891-5p 1 0 0
chr6:144537582|144539443 hsa-miR-6884-5p 1 1 0
chr6:144537582|144539443 hsa-miR-146b-5p 0 1 0
chr6:144537582|144539443 hsa-miR-655-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:144537582|144539443
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MSYLQSLSFLKFYPFQVNSDFYLKASPIQFYSAI
Nucleotide Sequence ATGTCATATTTACAGTCCTTAAGCTTTCTGAAATTTTATCCCTTTCAGGTAAACTCAGACTTTTATCTGAAAGCATCTCCAATTCAGTTCTATTCAGCCATTTGA
CircID chr6:144537582|144539443
ORF Type ORF2
Protein Length 87
Nucleotide Length 261
Protein Sequence MKYRHQLDEIICWLTKAEHAMQKRSTTELGENLQELRDLTQEMEVHAEKLKWLNRTELEMLSDKSLSLPERDKISESLRTVNMTWNK
Nucleotide Sequence ATGAAGTACAGGCATCAGCTAGATGAGATTATCTGTTGGTTAACAAAGGCTGAGCATGCTATGCAAAAGAGATCAACCACCGAATTGGGAGAAAACCTGCAAGAATTAAGAGACTTAACTCAAGAAATGGAAGTACATGCTGAAAAACTCAAATGGCTGAATAGAACTGAATTGGAGATGCTTTCAGATAAAAGTCTGAGTTTACCTGAAAGGGATAAAATTTCAGAAAGCTTAAGGACTGTAAATATGACATGGAATAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr6:144537582|144539443 ELAVL1 4 2 0
chr6:144537582|144539443 DGCR8 0 1 0
chr6:144537582|144539443 FBL 0 1 1
chr6:144537582|144539443 SRSF1 0 0 1
chr6:144537582|144539443 NOP58 0 0 1
chr6:144537582|144539443 RBM47 1 0 1
chr6:144537582|144539443 MSI1 1 0 0
chr6:144537582|144539443 U2AF2 7 7 0
chr6:144537582|144539443 NOP56 0 1 0
chr6:144537582|144539443 LIN28A 0 0 1
chr6:144537582|144539443 TARDBP 0 1 0
chr6:144537582|144539443 UPF1 0 1 0
chr6:144537582|144539443 DDX54 0 0 2
chr6:144537582|144539443 TAF15 0 1 0
chr6:144537582|144539443 PTBP1 0 0 1
chr6:144537582|144539443 IGF2BP2 0 0 5
chr6:144537582|144539443 IGF2BP3 0 0 1
chr6:144537582|144539443 EIF4A3 1 1 2
chr6:144537582|144539443 AGO2 0 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab