CircRNA Information

General Information
circRNA Basic Information
CircID chr6:151842597|151842787
Strand +
CircType exon
Host Gene ENSG00000091831.21;
Algorism find_circ;CIRI2;DCC;
Sequence GCCAAATTCAGATAATCGACGCCAGGGTGGCAGAGAAAGATTGGCCAGTACCAATGACAAGGGAAGTATGGCTATGGAATCTGCCAAGGAGACTCGCTACTGTGCAGTGTGCAATGACTATGCTTCAGGCTACCATTATGGAGTCTGGTCCTGTGAGGGCTGCAAGGCCTTCTTCAAGAGAAGTATTCAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:151842597|151842787 hsa-miR-19a-5p 0 0 1
chr6:151842597|151842787 hsa-miR-19a-3p 0 0 1
chr6:151842597|151842787 hsa-miR-135b-5p 0 0 1
chr6:151842597|151842787 hsa-miR-135b-3p 0 0 1
chr6:151842597|151842787 hsa-miR-335-5p 0 0 1
chr6:151842597|151842787 hsa-miR-335-3p 0 0 1
chr6:151842597|151842787 hsa-miR-484 0 0 1
chr6:151842597|151842787 hsa-miR-588 0 0 1
chr6:151842597|151842787 hsa-miR-648 0 1 1
chr6:151842597|151842787 hsa-miR-892a 0 0 1
chr6:151842597|151842787 hsa-miR-1294 0 0 1
chr6:151842597|151842787 hsa-miR-1248 0 0 1
chr6:151842597|151842787 hsa-miR-770-5p 1 1 1
chr6:151842597|151842787 hsa-miR-1289 0 0 1
chr6:151842597|151842787 hsa-miR-135a 0 0 1
chr6:151842597|151842787 hsa-miR-19b 0 0 1
chr6:151842597|151842787 hsa-miR-760 1 0 0
chr6:151842597|151842787 hsa-miR-1205 0 1 0
chr6:151842597|151842787 hsa-miR-3142 0 1 0
chr6:151842597|151842787 hsa-miR-3147 1 0 0
chr6:151842597|151842787 hsa-miR-3916 0 1 0
chr6:151842597|151842787 hsa-miR-4498 1 0 0
chr6:151842597|151842787 hsa-miR-4721 0 1 0
chr6:151842597|151842787 hsa-miR-4734 1 0 0
chr6:151842597|151842787 hsa-miR-9500 0 1 0
chr6:151842597|151842787 hsa-miR-143-5p 0 1 0
chr6:151842597|151842787 hsa-miR-4435 0 1 0
chr6:151842597|151842787 hsa-miR-1236-5p 1 0 0
chr6:151842597|151842787 hsa-miR-6089 1 0 0
chr6:151842597|151842787 hsa-miR-3064-5p 1 0 0
chr6:151842597|151842787 hsa-miR-197-5p 1 0 0
chr6:151842597|151842787 hsa-miR-6514-5p 0 1 0
chr6:151842597|151842787 hsa-miR-1226-5p 1 1 0
chr6:151842597|151842787 hsa-miR-3944-3p 1 0 0
chr6:151842597|151842787 hsa-miR-4640-5p 1 0 0
chr6:151842597|151842787 hsa-miR-6824-5p 1 0 0
chr6:151842597|151842787 hsa-miR-7152-3p 0 1 0
chr6:151842597|151842787 hsa-miR-6512-5p 0 1 0
chr6:151842597|151842787 hsa-miR-4763-3p 1 0 0
chr6:151842597|151842787 hsa-miR-6865-5p 1 1 0
chr6:151842597|151842787 hsa-miR-6756-5p 1 0 0
chr6:151842597|151842787 hsa-miR-6763-5p 1 0 0
chr6:151842597|151842787 hsa-miR-6797-5p 1 0 0
chr6:151842597|151842787 hsa-miR-6780b-5p 1 0 0
chr6:151842597|151842787 hsa-miR-6848-5p 1 0 0
chr6:151842597|151842787 hsa-miR-6858-5p 1 0 0
chr6:151842597|151842787 hsa-miR-6859-5p 0 1 0
chr6:151842597|151842787 hsa-miR-892c-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:151842597|151842787
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MTREVWLWNLPRRLATVQCAMTMLQATIMESGPVRAARPSSREVFK
Nucleotide Sequence ATGACAAGGGAAGTATGGCTATGGAATCTGCCAAGGAGACTCGCTACTGTGCAGTGTGCAATGACTATGCTTCAGGCTACCATTATGGAGTCTGGTCCTGTGAGGGCTGCAAGGCCTTCTTCAAGAGAAGTATTCAAG
CircID chr6:151842597|151842787
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MAMESAKETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQ
Nucleotide Sequence ATGGCTATGGAATCTGCCAAGGAGACTCGCTACTGTGCAGTGTGCAATGACTATGCTTCAGGCTACCATTATGGAGTCTGGTCCTGTGAGGGCTGCAAGGCCTTCTTCAAGAGAAGTATTCAA
CircID chr6:151842597|151842787
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MADSIAILPLSLVLANLSLPPWRRLSEFG
Nucleotide Sequence TTGGCAGATTCCATAGCCATACTTCCCTTGTCATTGGTACTGGCCAATCTTTCTCTGCCACCCTGGCGTCGATTATCTGAATTTGGC
CircID chr6:151842597|151842787
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MASTNDKGSMAMESAKETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQ
Nucleotide Sequence TTGGCCAGTACCAATGACAAGGGAAGTATGGCTATGGAATCTGCCAAGGAGACTCGCTACTGTGCAGTGTGCAATGACTATGCTTCAGGCTACCATTATGGAGTCTGGTCCTGTGAGGGCTGCAAGGCCTTCTTCAAGAGAAGTATTCAA
CircID chr6:151842597|151842787
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MTREVWLWNLPRRLATVQCAMTMLQATIMESGPVRAARPSSREVFK
Nucleotide Sequence ATGACAAGGGAAGTATGGCTATGGAATCTGCCAAGGAGACTCGCTACTGTGCAGTGTGCAATGACTATGCTTCAGGCTACCATTATGGAGTCTGGTCCTGTGAGGGCTGCAAGGCCTTCTTCAAGAGAAGTATTCAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr6:151842597|151842787 DGCR8 0 2 0
chr6:151842597|151842787 PTBP1 0 1 0
chr6:151842597|151842787 NOP56 0 1 0
chr6:151842597|151842787 CSTF2T 0 1 1
chr6:151842597|151842787 DDX54 0 10 4
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab