CircRNA Information

General Information
circRNA Basic Information
CircID chr6:157206913|157207153
Strand +
CircType exon
Host Gene ENSG00000049618.20;
Algorism CIRI2;
Sequence CCCCTTGTCCTCATCCTCCTCTTTCTCATAGGTCTGCGGTGCTCGCTTTCTCTCTGGATGCTCGTGGTGAAGAAGAATCAGCTTCCCCAGGATCAGCACCAGGCCTGGATGTTTGGACATTTCGGCATCATTGCCAGGCACGAATGACAAGCTACGGACAATATTGGACACACAGATGCATCGCTTAGCCAGCGAGTCCTGCCAGTGCGCGATGGTACACAGAGGAGTCTCGTCTCGGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:157206913|157207153 hsa-miR-197-5p 0 0 1
chr6:157206913|157207153 hsa-miR-197-3p 0 0 1
chr6:157206913|157207153 hsa-miR-412-5p 0 0 1
chr6:157206913|157207153 hsa-miR-412-3p 0 0 1
chr6:157206913|157207153 hsa-miR-517-5p 0 0 1
chr6:157206913|157207153 hsa-miR-517a-3p 0 0 1
chr6:157206913|157207153 hsa-miR-517c-3p 0 0 1
chr6:157206913|157207153 hsa-miR-539-5p 0 0 1
chr6:157206913|157207153 hsa-miR-539-3p 0 0 1
chr6:157206913|157207153 hsa-miR-583 0 0 1
chr6:157206913|157207153 hsa-miR-616-5p 0 0 1
chr6:157206913|157207153 hsa-miR-616-3p 0 0 1
chr6:157206913|157207153 hsa-miR-661 1 0 1
chr6:157206913|157207153 hsa-miR-1298-5p 0 0 1
chr6:157206913|157207153 hsa-miR-1298-3p 0 0 1
chr6:157206913|157207153 hsa-miR-1286 0 0 1
chr6:157206913|157207153 hsa-miR-1255a 0 0 1
chr6:157206913|157207153 hsa-miR-1322 0 0 1
chr6:157206913|157207153 hsa-miR-1224-5p 0 0 1
chr6:157206913|157207153 hsa-miR-525-5p 0 1 1
chr6:157206913|157207153 hsa-miR-1207-5p 0 0 1
chr6:157206913|157207153 hsa-miR-520a-5p 0 1 1
chr6:157206913|157207153 hsa-miR-220b 0 0 1
chr6:157206913|157207153 hsa-miR-550 0 0 1
chr6:157206913|157207153 hsa-miR-1255b 0 0 1
chr6:157206913|157207153 hsa-miR-1254 0 0 1
chr6:157206913|157207153 hsa-miR-720 0 0 1
chr6:157206913|157207153 hsa-miR-2861 1 0 0
chr6:157206913|157207153 hsa-miR-3153 0 1 0
chr6:157206913|157207153 hsa-miR-4298 1 0 0
chr6:157206913|157207153 hsa-miR-3911 1 0 0
chr6:157206913|157207153 hsa-miR-4498 1 0 0
chr6:157206913|157207153 hsa-miR-2392 0 1 0
chr6:157206913|157207153 hsa-miR-4537 0 1 0
chr6:157206913|157207153 hsa-miR-4657 1 0 0
chr6:157206913|157207153 hsa-miR-6124 1 0 0
chr6:157206913|157207153 hsa-miR-6165 1 0 0
chr6:157206913|157207153 hsa-miR-8089 0 1 0
chr6:157206913|157207153 hsa-miR-12114 1 0 0
chr6:157206913|157207153 hsa-miR-12118 1 0 0
chr6:157206913|157207153 hsa-miR-6894-5p 0 1 0
chr6:157206913|157207153 hsa-miR-181c-3p 0 1 0
chr6:157206913|157207153 hsa-miR-7851-3p 1 0 0
chr6:157206913|157207153 hsa-miR-3663-3p 0 1 0
chr6:157206913|157207153 hsa-miR-6880-5p 1 0 0
chr6:157206913|157207153 hsa-miR-3605-5p 0 1 0
chr6:157206913|157207153 hsa-miR-6760-5p 0 1 0
chr6:157206913|157207153 hsa-miR-6782-5p 1 0 0
chr6:157206913|157207153 hsa-miR-185-5p 0 1 0
chr6:157206913|157207153 hsa-miR-5580-5p 0 1 0
chr6:157206913|157207153 hsa-miR-877-5p 1 0 0
chr6:157206913|157207153 hsa-miR-6749-5p 1 0 0
chr6:157206913|157207153 hsa-miR-6780a-3p 0 1 0
chr6:157206913|157207153 hsa-miR-3160-3p 0 1 0
chr6:157206913|157207153 hsa-miR-6824-5p 1 0 0
chr6:157206913|157207153 hsa-miR-6878-5p 0 1 0
chr6:157206913|157207153 hsa-miR-106b-3p 0 1 0
chr6:157206913|157207153 hsa-miR-7113-5p 0 1 0
chr6:157206913|157207153 hsa-miR-5004-5p 0 1 0
chr6:157206913|157207153 hsa-miR-4763-3p 1 0 0
chr6:157206913|157207153 hsa-miR-11181-3p 1 0 0
chr6:157206913|157207153 hsa-miR-6836-5p 1 0 0
chr6:157206913|157207153 hsa-miR-10526-3p 1 0 0
chr6:157206913|157207153 hsa-miR-6858-5p 1 0 0
chr6:157206913|157207153 hsa-miR-6831-5p 1 0 0
chr6:157206913|157207153 hsa-miR-939-5p 1 0 0
chr6:157206913|157207153 hsa-miR-6758-5p 1 0 0
chr6:157206913|157207153 hsa-miR-6856-5p 0 1 0
chr6:157206913|157207153 hsa-miR-1271-3p 1 1 0
chr6:157206913|157207153 hsa-miR-6891-5p 1 1 0
chr6:157206913|157207153 hsa-miR-3059-5p 0 1 0
chr6:157206913|157207153 hsa-miR-323b-5p 1 0 0
chr6:157206913|157207153 hsa-miR-494-5p 1 0 0
chr6:157206913|157207153 hsa-miR-16-2-3p 0 1 0
chr6:157206913|157207153 hsa-miR-4659b-3p 0 1 0
chr6:157206913|157207153 hsa-miR-195-3p 0 1 0
chr6:157206913|157207153 hsa-miR-4659a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:157206913|157207153
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MRCSLSLWMLVVKKNQLPQDQHQAWMFGHFGIIARHE
Nucleotide Sequence CTGCGGTGCTCGCTTTCTCTCTGGATGCTCGTGGTGAAGAAGAATCAGCTTCCCCAGGATCAGCACCAGGCCTGGATGTTTGGACATTTCGGCATCATTGCCAGGCACGAATGA
CircID chr6:157206913|157207153
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MDISASLPGTNDKLRTILDTQMHRLASESCQCAMVHRGVSSRL
Nucleotide Sequence TTGGACATTTCGGCATCATTGCCAGGCACGAATGACAAGCTACGGACAATATTGGACACACAGATGCATCGCTTAGCCAGCGAGTCCTGCCAGTGCGCGATGGTACACAGAGGAGTCTCGTCTCGGCTC
CircID chr6:157206913|157207153
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MDARGEEESASPGSAPGLDVWTFRHHCQARMTSYGQYWTHRCIA
Nucleotide Sequence CTGGATGCTCGTGGTGAAGAAGAATCAGCTTCCCCAGGATCAGCACCAGGCCTGGATGTTTGGACATTTCGGCATCATTGCCAGGCACGAATGACAAGCTACGGACAATATTGGACACACAGATGCATCGCTTAG
CircID chr6:157206913|157207153
ORF Type ORF4
Protein Length 74
Nucleotide Length 222
Protein Sequence MCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHPGLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKG
Nucleotide Sequence CTGTGTACCATCGCGCACTGGCAGGACTCGCTGGCTAAGCGATGCATCTGTGTGTCCAATATTGTCCGTAGCTTGTCATTCGTGCCTGGCAATGATGCCGAAATGTCCAAACATCCAGGCCTGGTGCTGATCCTGGGGAAGCTGATTCTTCTTCACCACGAGCATCCAGAGAGAAAGCGAGCACCGCAGACCTATGAGAAAGAGGAGGATGAGGACAAGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab