CircRNA Information

General Information
circRNA Basic Information
CircID chr6:158583954|158589782
Strand +
CircType exon
Host Gene ENSG00000146433.8;
Algorism find_circ;CIRI2;DCC;
Sequence CTAAAGCCAATTCAAATACTTTCAAATCCACTGTCTACATACAATCAGCAACTATGGCTGACATGTGTTGTTGAGTTGGATCAATCAAAAGAAACTTCTATTAAGACAAGCTTTCCCATGACTGTTAAAGTCGATGGTGTAGCTCAAGATGGAACCACGATGTACATTCATAACAAAGTTCACAACCGGACAAGGACCCTCACATGTGCAGGGGGGATGAGTCAGCTTCCAAAGTGTATTTTCCCCATCTATAAAGTTGGGATCAAGCCTTCCCTGCCTGCCTTAGGAAAGCAGTAAAGATCAAGGTGAATAACGTAGGTACATCATTGTCAGCAGCAGAACCGTGGTTTGAACTTGGGATGCCGGAACCGCTGGTGTAGTTTTTTTAAACTCGCAAATCTTTCTGTGTATTTGCAGAAATGTGCGGAGATTATTGTGGCTCACCTTGGCTACCTGAACTACACTCAGTATACAGTGATAGTGGGATTTGAACACCTGAAGCTCCCCATCAAGGGAATGAACTTCACA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:158583954|158589782 hsa-miR-208a-5p 0 0 1
chr6:158583954|158589782 hsa-miR-208a-3p 0 0 1
chr6:158583954|158589782 hsa-miR-181c-5p 0 0 1
chr6:158583954|158589782 hsa-miR-181c-3p 0 0 1
chr6:158583954|158589782 hsa-miR-135b-5p 0 0 1
chr6:158583954|158589782 hsa-miR-135b-3p 0 0 1
chr6:158583954|158589782 hsa-miR-495-5p 0 0 1
chr6:158583954|158589782 hsa-miR-495-3p 0 0 1
chr6:158583954|158589782 hsa-miR-181d-5p 0 0 1
chr6:158583954|158589782 hsa-miR-181d-3p 0 0 1
chr6:158583954|158589782 hsa-miR-545-5p 0 0 1
chr6:158583954|158589782 hsa-miR-545-3p 0 0 1
chr6:158583954|158589782 hsa-miR-571 0 0 1
chr6:158583954|158589782 hsa-miR-607 0 1 1
chr6:158583954|158589782 hsa-miR-641 0 0 1
chr6:158583954|158589782 hsa-miR-653-5p 0 0 1
chr6:158583954|158589782 hsa-miR-653-3p 0 0 1
chr6:158583954|158589782 hsa-miR-658 1 0 1
chr6:158583954|158589782 hsa-miR-147b-5p 0 0 1
chr6:158583954|158589782 hsa-miR-147b-3p 0 0 1
chr6:158583954|158589782 hsa-miR-208b-5p 0 0 1
chr6:158583954|158589782 hsa-miR-208b-3p 0 0 1
chr6:158583954|158589782 hsa-miR-934 0 0 1
chr6:158583954|158589782 hsa-miR-943 0 0 1
chr6:158583954|158589782 hsa-miR-513b-5p 0 0 1
chr6:158583954|158589782 hsa-miR-513b-3p 0 0 1
chr6:158583954|158589782 hsa-miR-127-5p 0 0 1
chr6:158583954|158589782 hsa-miR-181a-3p 0 1 1
chr6:158583954|158589782 hsa-miR-218-1-3p 0 1 1
chr6:158583954|158589782 hsa-miR-181a 0 0 1
chr6:158583954|158589782 hsa-miR-181b 0 0 1
chr6:158583954|158589782 hsa-miR-135a 0 0 1
chr6:158583954|158589782 hsa-miR-24 0 0 1
chr6:158583954|158589782 hsa-miR-219-1-3p 0 0 1
chr6:158583954|158589782 hsa-miR-499-5p 0 0 1
chr6:158583954|158589782 hsa-miR-4254 0 1 0
chr6:158583954|158589782 hsa-miR-4442 0 1 0
chr6:158583954|158589782 hsa-miR-4539 0 1 0
chr6:158583954|158589782 hsa-miR-4654 0 1 0
chr6:158583954|158589782 hsa-miR-4706 1 0 0
chr6:158583954|158589782 hsa-miR-10226 0 1 0
chr6:158583954|158589782 hsa-miR-212-5p 0 1 0
chr6:158583954|158589782 hsa-miR-4474-3p 0 1 0
chr6:158583954|158589782 hsa-miR-34a-3p 0 1 0
chr6:158583954|158589782 hsa-miR-6850-5p 1 0 0
chr6:158583954|158589782 hsa-miR-5584-5p 0 1 0
chr6:158583954|158589782 hsa-miR-5089-5p 0 1 0
chr6:158583954|158589782 hsa-miR-1909-3p 1 0 0
chr6:158583954|158589782 hsa-miR-675-5p 1 0 0
chr6:158583954|158589782 hsa-miR-9851-5p 0 1 0
chr6:158583954|158589782 hsa-miR-3622a-3p 0 1 0
chr6:158583954|158589782 hsa-miR-3622b-3p 0 1 0
chr6:158583954|158589782 hsa-miR-520e-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:158583954|158589782
ORF Type ORF1
Protein Length 59
Nucleotide Length 180
Protein Sequence MSVVQVAKVSHNNLRTFPCTCEGPCPVVNFVMNVHRGSILSYTIDFNSHGKACLNRSFF
Nucleotide Sequence CTGAGTGTAGTTCAGGTAGCCAAGGTGAGCCACAATAATCTCCGCACATTTCCCTGCACATGTGAGGGTCCTTGTCCGGTTGTGAACTTTGTTATGAATGTACATCGTGGTTCCATCTTGAGCTACACCATCGACTTTAACAGTCATGGGAAAGCTTGTCTTAATAGAAGTTTCTTTTGA
CircID chr6:158583954|158589782
ORF Type ORF2
Protein Length 98
Nucleotide Length 294
Protein Sequence MSTYNQQLWLTCVVELDQSKETSIKTSFPMTVKVDGVAQDGTTMYIHNKVHNRTRTLTCAGKCAEIIVAHLGYLNYTQYTVIVGFEHLKLPIKGMNFT
Nucleotide Sequence CTGTCTACATACAATCAGCAACTATGGCTGACATGTGTTGTTGAGTTGGATCAATCAAAAGAAACTTCTATTAAGACAAGCTTTCCCATGACTGTTAAAGTCGATGGTGTAGCTCAAGATGGAACCACGATGTACATTCATAACAAAGTTCACAACCGGACAAGGACCCTCACATGTGCAGGGAAATGTGCGGAGATTATTGTGGCTCACCTTGGCTACCTGAACTACACTCAGTATACAGTGATAGTGGGATTTGAACACCTGAAGCTCCCCATCAAGGGAATGAACTTCACA
CircID chr6:158583954|158589782
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MEPRCTFITKFTTGQGPSHVQGNVRRLLWLTLAT
Nucleotide Sequence ATGGAACCACGATGTACATTCATAACAAAGTTCACAACCGGACAAGGACCCTCACATGTGCAGGGAAATGTGCGGAGATTATTGTGGCTCACCTTGGCTACCTGA
CircID chr6:158583954|158589782
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MCREMCGDYCGSPWLPELHSVYSDSGI
Nucleotide Sequence ATGTGCAGGGAAATGTGCGGAGATTATTGTGGCTCACCTTGGCTACCTGAACTACACTCAGTATACAGTGATAGTGGGATTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr6:158583954|158589782 MOV10 0 0 3
chr6:158583954|158589782 ELAVL1 3 1 2
chr6:158583954|158589782 ELAVL3 0 1 0
chr6:158583954|158589782 SF3B1 1 0 0
chr6:158583954|158589782 PRPF8 0 2 0
chr6:158583954|158589782 YTHDF1 0 0 1
chr6:158583954|158589782 UPF1 1 0 0
chr6:158583954|158589782 TAF15 1 0 0
chr6:158583954|158589782 FMR1 0 1 2
chr6:158583954|158589782 NUDT21 1 0 0
chr6:158583954|158589782 FUS 2 1 1
chr6:158583954|158589782 DGCR8 2 0 0
chr6:158583954|158589782 NOP58 0 1 2
chr6:158583954|158589782 U2AF2 11 1 1
chr6:158583954|158589782 DDX54 1 0 11
chr6:158583954|158589782 PTBP1 0 0 2
chr6:158583954|158589782 HNRNPC 7 2 0
chr6:158583954|158589782 HNRNPA1 1 1 0
chr6:158583954|158589782 ACIN1 0 0 1
chr6:158583954|158589782 LIN28B 0 0 1
chr6:158583954|158589782 IGF2BP1 0 1 6
chr6:158583954|158589782 IGF2BP3 1 0 2
chr6:158583954|158589782 IGF2BP2 1 0 17
chr6:158583954|158589782 FTO 1 0 0
chr6:158583954|158589782 TARDBP 3 1 1
chr6:158583954|158589782 RBM47 1 0 2
chr6:158583954|158589782 CSTF2T 1 0 2
chr6:158583954|158589782 AGO2 0 0 1
chr6:158583954|158589782 EIF4A3 1 1 5
chr6:158583954|158589782 FBL 0 1 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab