CircRNA Information

General Information
circRNA Basic Information
CircID chr6:158690278|158690444
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence AAAAAGTGCTGTTAGAGGGAGTAGTGTCCATTGTCAGTGCCCAGCACTGAGTAGGCACCTTACAAATGTAGACATCCTTCCCTTTTTGACACGGGGAAACCTAAAGCTAAATGTAACATTCAGTTGCAGTAATTCCAGGAATCATTACACCCTCTGCACCCAGTTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:158690278|158690444 hsa-miR-18a-5p 0 0 1
chr6:158690278|158690444 hsa-miR-18a-3p 0 0 1
chr6:158690278|158690444 hsa-miR-148a-5p 0 0 1
chr6:158690278|158690444 hsa-miR-148a-3p 0 0 1
chr6:158690278|158690444 hsa-miR-217-5p 0 0 1
chr6:158690278|158690444 hsa-miR-217-3p 0 0 1
chr6:158690278|158690444 hsa-miR-152-5p 0 0 1
chr6:158690278|158690444 hsa-miR-152-3p 0 0 1
chr6:158690278|158690444 hsa-miR-148b-5p 0 0 1
chr6:158690278|158690444 hsa-miR-148b-3p 0 0 1
chr6:158690278|158690444 hsa-miR-18b-5p 0 0 1
chr6:158690278|158690444 hsa-miR-18b-3p 0 0 1
chr6:158690278|158690444 hsa-miR-510-5p 0 0 1
chr6:158690278|158690444 hsa-miR-510-3p 0 0 1
chr6:158690278|158690444 hsa-miR-612 0 0 1
chr6:158690278|158690444 hsa-miR-891b 0 0 1
chr6:158690278|158690444 hsa-miR-934 0 0 1
chr6:158690278|158690444 hsa-miR-1265 0 0 1
chr6:158690278|158690444 hsa-miR-512-5p 0 0 1
chr6:158690278|158690444 hsa-miR-512-3p 0 0 1
chr6:158690278|158690444 hsa-miR-509-3-5p 0 0 1
chr6:158690278|158690444 hsa-miR-509-5p 0 0 1
chr6:158690278|158690444 hsa-miR-642 0 0 1
chr6:158690278|158690444 hsa-miR-1285 0 0 1
chr6:158690278|158690444 hsa-miR-658 1 0 0
chr6:158690278|158690444 hsa-miR-3147 0 1 0
chr6:158690278|158690444 hsa-miR-4254 0 1 0
chr6:158690278|158690444 hsa-miR-4469 0 1 0
chr6:158690278|158690444 hsa-miR-6860 0 1 0
chr6:158690278|158690444 hsa-miR-6804-5p 1 0 0
chr6:158690278|158690444 hsa-miR-145-3p 1 1 0
chr6:158690278|158690444 hsa-miR-6741-5p 1 1 0
chr6:158690278|158690444 hsa-miR-5589-5p 1 0 0
chr6:158690278|158690444 hsa-miR-6776-5p 1 1 0
chr6:158690278|158690444 hsa-miR-6772-5p 1 0 0
chr6:158690278|158690444 hsa-miR-6798-5p 1 0 0
chr6:158690278|158690444 hsa-miR-6835-5p 1 0 0
chr6:158690278|158690444 hsa-miR-4738-3p 0 1 0
chr6:158690278|158690444 hsa-miR-24-1-5p 0 1 0
chr6:158690278|158690444 hsa-miR-7159-5p 1 0 0
chr6:158690278|158690444 hsa-miR-4763-3p 1 0 0
chr6:158690278|158690444 hsa-miR-6769b-5p 1 0 0
chr6:158690278|158690444 hsa-miR-6752-5p 1 0 0
chr6:158690278|158690444 hsa-miR-6756-5p 1 0 0
chr6:158690278|158690444 hsa-miR-6803-5p 1 0 0
chr6:158690278|158690444 hsa-miR-6751-5p 1 0 0
chr6:158690278|158690444 hsa-miR-6779-5p 1 0 0
chr6:158690278|158690444 hsa-miR-5189-5p 0 1 0
chr6:158690278|158690444 hsa-miR-5196-5p 1 1 0
chr6:158690278|158690444 hsa-miR-4701-3p 1 0 0
chr6:158690278|158690444 hsa-miR-4725-3p 1 0 0
chr6:158690278|158690444 hsa-miR-675-5p 1 0 0
chr6:158690278|158690444 hsa-miR-6883-5p 1 0 0
chr6:158690278|158690444 hsa-miR-1285-3p 0 1 0
chr6:158690278|158690444 hsa-miR-1271-3p 1 1 0
chr6:158690278|158690444 hsa-miR-4747-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:158690278|158690444
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MSRHLTNVDILPFLTRGNLKLNVTFSCSNSRNHYTLCTQF
Nucleotide Sequence CTGAGTAGGCACCTTACAAATGTAGACATCCTTCCCTTTTTGACACGGGGAAACCTAAAGCTAAATGTAACATTCAGTTGCAGTAATTCCAGGAATCATTACACCCTCTGCACCCAGTTT
CircID chr6:158690278|158690444
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MELLQLNVTFSFRFPRVKKGRMSTFVRCLLSAGH
Nucleotide Sequence CTGGAATTACTGCAACTGAATGTTACATTTAGCTTTAGGTTTCCCCGTGTCAAAAAGGGAAGGATGTCTACATTTGTAAGGTGCCTACTCAGTGCTGGGCACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab