CircRNA Information

General Information
circRNA Basic Information
CircID chr6:158767588|158767708
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCCTCTGTCCTGGCAGGCTAAGGCAGCACTGAACTGTGCTGGGCTGTGGCTTCGAAGAGGAGCACCCTCAGGGTGCATGGGGGGTTTACAACCCTCTGCGTCCAAGACAGGAAGAGGAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:158767588|158767708 hsa-miR-30a-5p 0 0 1
chr6:158767588|158767708 hsa-miR-30a-3p 0 0 1
chr6:158767588|158767708 hsa-miR-148a-5p 0 0 1
chr6:158767588|158767708 hsa-miR-148a-3p 0 0 1
chr6:158767588|158767708 hsa-miR-30d-5p 0 0 1
chr6:158767588|158767708 hsa-miR-30d-3p 0 0 1
chr6:158767588|158767708 hsa-miR-30b-5p 0 0 1
chr6:158767588|158767708 hsa-miR-30b-3p 0 0 1
chr6:158767588|158767708 hsa-miR-152-5p 0 0 1
chr6:158767588|158767708 hsa-miR-152-3p 0 0 1
chr6:158767588|158767708 hsa-miR-30e-5p 0 0 1
chr6:158767588|158767708 hsa-miR-30e-3p 0 0 1
chr6:158767588|158767708 hsa-miR-148b-5p 0 0 1
chr6:158767588|158767708 hsa-miR-148b-3p 0 0 1
chr6:158767588|158767708 hsa-miR-431-5p 0 0 1
chr6:158767588|158767708 hsa-miR-431-3p 0 0 1
chr6:158767588|158767708 hsa-miR-432-5p 0 0 1
chr6:158767588|158767708 hsa-miR-432-3p 0 0 1
chr6:158767588|158767708 hsa-miR-596 0 1 1
chr6:158767588|158767708 hsa-miR-1236-5p 0 0 1
chr6:158767588|158767708 hsa-miR-1236-3p 0 0 1
chr6:158767588|158767708 hsa-miR-512-3p -7 1 1
chr6:158767588|158767708 hsa-miR-296-3p -2 0 1
chr6:158767588|158767708 hsa-miR-125a-5p 0 0 1
chr6:158767588|158767708 hsa-miR-502-3p -2 0 1
chr6:158767588|158767708 hsa-miR-501-3p -4 0 1
chr6:158767588|158767708 hsa-miR-125b 0 0 1
chr6:158767588|158767708 hsa-miR-30c 0 0 1
chr6:158767588|158767708 hsa-miR-658 -9 1 0
chr6:158767588|158767708 hsa-miR-544b -7 1 0
chr6:158767588|158767708 hsa-miR-4421 -9 1 0
chr6:158767588|158767708 hsa-miR-4436a 0 1 0
chr6:158767588|158767708 hsa-miR-5685 -7 1 0
chr6:158767588|158767708 hsa-miR-6881-3p -15 1 0
chr6:158767588|158767708 hsa-miR-5006-5p 0 1 0
chr6:158767588|158767708 hsa-miR-6772-3p -6 1 0
chr6:158767588|158767708 hsa-miR-103b -14 1 0
chr6:158767588|158767708 hsa-miR-7152-5p -6 1 0
chr6:158767588|158767708 hsa-miR-6798-3p -8 1 0
chr6:158767588|158767708 hsa-miR-4722-3p 0 1 0
chr6:158767588|158767708 hsa-miR-4690-3p -9 1 0
chr6:158767588|158767708 hsa-miR-6771-3p -1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:158767588|158767708
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MSWQAKAALNCAGLWLRRGAPSGCMGGLQPSASKTGRG
Nucleotide Sequence CTGTCCTGGCAGGCTAAGGCAGCACTGAACTGTGCTGGGCTGTGGCTTCGAAGAGGAGCACCCTCAGGGTGCATGGGGGGTTTACAACCCTCTGCGTCCAAGACAGGAAGAGGA
CircID chr6:158767588|158767708
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MGCGFEEEHPQGAWGVYNPLRPRQEEE
Nucleotide Sequence CTGGGCTGTGGCTTCGAAGAGGAGCACCCTCAGGGTGCATGGGGGGTTTACAACCCTCTGCGTCCAAGACAGGAAGAGGAA
CircID chr6:158767588|158767708
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MCWAVASKRSTLRVHGGFTTLCVQDRKR
Nucleotide Sequence CTGTGCTGGGCTGTGGCTTCGAAGAGGAGCACCCTCAGGGTGCATGGGGGGTTTACAACCCTCTGCGTCCAAGACAGGAAGAGG
CircID chr6:158767588|158767708
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MSWTQRVVNPPCTLRVLLFEATAQHSSVLP
Nucleotide Sequence CTGTCTTGGACGCAGAGGGTTGTAAACCCCCCATGCACCCTGAGGGTGCTCCTCTTCGAAGCCACAGCCCAGCACAGTTCAGTGCTGCCTTAG
CircID chr6:158767588|158767708
ORF Type ORF5
Protein Length 35
Nucleotide Length 105
Protein Sequence MDAEGCKPPMHPEGAPLRSHSPAQFSAALACQDRG
Nucleotide Sequence TTGGACGCAGAGGGTTGTAAACCCCCCATGCACCCTGAGGGTGCTCCTCTTCGAAGCCACAGCCCAGCACAGTTCAGTGCTGCCTTAGCCTGCCAGGACAGAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab