CircRNA Information

General Information
circRNA Basic Information
CircID chr6:159036037|159036242
Strand +
CircType exon
Host Gene ENSG00000164691.15;
Algorism CIRI2;
Sequence CCTCTTATGAAGAGGCCATGCAGGGCCCGGCAGCCAGACTAGTGGCCTCCGAGAGCCAGACCGTGGGGAGCATGACGGTGGGGAGCATGAGGGCGAGGATGCTGGAGGCGCACTGCCTCCTACCCCCTCTTCCACCTGCTCACCACGTAGAGGACTCAAGACACAGGGGCAGCAAAGAGCCACTCCCTGGCCACGGACTCTCTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:159036037|159036242 hsa-miR-34a-5p 0 0 1
chr6:159036037|159036242 hsa-miR-34a-3p 0 0 1
chr6:159036037|159036242 hsa-miR-149-5p 0 0 1
chr6:159036037|159036242 hsa-miR-149-3p 0 0 1
chr6:159036037|159036242 hsa-miR-185-5p 0 0 1
chr6:159036037|159036242 hsa-miR-185-3p 0 0 1
chr6:159036037|159036242 hsa-miR-449a 0 1 1
chr6:159036037|159036242 hsa-miR-431-5p 0 0 1
chr6:159036037|159036242 hsa-miR-431-3p 0 0 1
chr6:159036037|159036242 hsa-miR-526b-5p 0 0 1
chr6:159036037|159036242 hsa-miR-526b-3p 0 0 1
chr6:159036037|159036242 hsa-miR-604 0 0 1
chr6:159036037|159036242 hsa-miR-627-5p 0 0 1
chr6:159036037|159036242 hsa-miR-627-3p 0 0 1
chr6:159036037|159036242 hsa-miR-647 0 0 1
chr6:159036037|159036242 hsa-miR-650 0 1 1
chr6:159036037|159036242 hsa-miR-449b-5p 0 0 1
chr6:159036037|159036242 hsa-miR-449b-3p 0 0 1
chr6:159036037|159036242 hsa-miR-766-5p 0 0 1
chr6:159036037|159036242 hsa-miR-766-3p 0 0 1
chr6:159036037|159036242 hsa-miR-760 0 0 1
chr6:159036037|159036242 hsa-miR-1204 0 0 1
chr6:159036037|159036242 hsa-miR-1291 0 0 1
chr6:159036037|159036242 hsa-miR-1249-5p 0 0 1
chr6:159036037|159036242 hsa-miR-1249-3p 0 0 1
chr6:159036037|159036242 hsa-miR-1281 0 0 1
chr6:159036037|159036242 hsa-miR-1827 0 0 1
chr6:159036037|159036242 hsa-miR-338-3p 0 1 1
chr6:159036037|159036242 hsa-miR-324-3p 0 0 1
chr6:159036037|159036242 hsa-miR-34c-5p 0 0 1
chr6:159036037|159036242 hsa-miR-1280 0 0 1
chr6:159036037|159036242 hsa-miR-7 0 0 1
chr6:159036037|159036242 hsa-miR-1538 1 0 0
chr6:159036037|159036242 hsa-miR-4270 1 0 0
chr6:159036037|159036242 hsa-miR-3665 0 1 0
chr6:159036037|159036242 hsa-miR-3907 1 0 0
chr6:159036037|159036242 hsa-miR-3909 0 1 0
chr6:159036037|159036242 hsa-miR-6069 1 0 0
chr6:159036037|159036242 hsa-miR-6127 1 0 0
chr6:159036037|159036242 hsa-miR-6745 0 1 0
chr6:159036037|159036242 hsa-miR-8085 0 1 0
chr6:159036037|159036242 hsa-miR-8086 1 0 0
chr6:159036037|159036242 hsa-miR-12114 0 1 0
chr6:159036037|159036242 hsa-miR-12127 1 0 0
chr6:159036037|159036242 hsa-miR-6822-3p 1 0 0
chr6:159036037|159036242 hsa-miR-4687-3p 1 0 0
chr6:159036037|159036242 hsa-miR-6833-5p 0 1 0
chr6:159036037|159036242 hsa-miR-1227-5p 1 0 0
chr6:159036037|159036242 hsa-miR-6089 1 0 0
chr6:159036037|159036242 hsa-miR-7847-3p 0 1 0
chr6:159036037|159036242 hsa-miR-4695-5p 1 1 0
chr6:159036037|159036242 hsa-miR-3064-5p 0 1 0
chr6:159036037|159036242 hsa-miR-3677-5p 1 0 0
chr6:159036037|159036242 hsa-miR-197-5p 1 0 0
chr6:159036037|159036242 hsa-miR-6726-3p 0 1 0
chr6:159036037|159036242 hsa-miR-7108-5p 1 0 0
chr6:159036037|159036242 hsa-miR-6732-5p 1 1 0
chr6:159036037|159036242 hsa-miR-6882-3p 1 0 0
chr6:159036037|159036242 hsa-miR-6835-5p 0 1 0
chr6:159036037|159036242 hsa-miR-6772-3p 0 1 0
chr6:159036037|159036242 hsa-miR-4640-5p 1 0 0
chr6:159036037|159036242 hsa-miR-6878-3p 0 1 0
chr6:159036037|159036242 hsa-miR-6501-5p 1 0 0
chr6:159036037|159036242 hsa-miR-5196-3p 0 1 0
chr6:159036037|159036242 hsa-miR-3162-5p 1 0 0
chr6:159036037|159036242 hsa-miR-146b-3p 0 1 0
chr6:159036037|159036242 hsa-miR-6880-3p 0 1 0
chr6:159036037|159036242 hsa-miR-3173-5p 0 1 0
chr6:159036037|159036242 hsa-miR-6847-3p 1 0 0
chr6:159036037|159036242 hsa-miR-1343-5p 1 0 0
chr6:159036037|159036242 hsa-miR-6754-5p 0 1 0
chr6:159036037|159036242 hsa-miR-6803-5p 0 1 0
chr6:159036037|159036242 hsa-miR-3620-5p 1 0 0
chr6:159036037|159036242 hsa-miR-6836-5p 1 0 0
chr6:159036037|159036242 hsa-miR-449c-5p 0 1 0
chr6:159036037|159036242 hsa-miR-34b-5p 0 1 0
chr6:159036037|159036242 hsa-miR-6731-5p 1 0 0
chr6:159036037|159036242 hsa-miR-6799-3p 0 1 0
chr6:159036037|159036242 hsa-miR-10401-3p 0 1 0
chr6:159036037|159036242 hsa-miR-3085-3p 1 1 0
chr6:159036037|159036242 hsa-miR-2682-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:159036037|159036242
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MPPTPSSTCSPRRGLKTQGQQRATPWPRTLS
Nucleotide Sequence CTGCCTCCTACCCCCTCTTCCACCTGCTCACCACGTAGAGGACTCAAGACACAGGGGCAGCAAAGAGCCACTCCCTGGCCACGGACTCTCTCC
CircID chr6:159036037|159036242
ORF Type ORF2
Protein Length 63
Nucleotide Length 189
Protein Sequence MQGPAARLVASESQTVGSMTVGSMRARMLEAHCLLPPLPPAHHVEDSRHRGSKEPLPGHGLSP
Nucleotide Sequence ATGCAGGGCCCGGCAGCCAGACTAGTGGCCTCCGAGAGCCAGACCGTGGGGAGCATGACGGTGGGGAGCATGAGGGCGAGGATGCTGGAGGCGCACTGCCTCCTACCCCCTCTTCCACCTGCTCACCACGTAGAGGACTCAAGACACAGGGGCAGCAAAGAGCCACTCCCTGGCCACGGACTCTCTCCC
CircID chr6:159036037|159036242
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MLPTVMLPTVWLSEATSLAAGPCMASS
Nucleotide Sequence ATGCTCCCCACCGTCATGCTCCCCACGGTCTGGCTCTCGGAGGCCACTAGTCTGGCTGCCGGGCCCTGCATGGCCTCTTCATAA
CircID chr6:159036037|159036242
ORF Type ORF4
Protein Length 53
Nucleotide Length 159
Protein Sequence MSPLRGEQVEEGVGGSAPPASSPSCSPPSCSPRSGSRRPLVWLPGPAWPLHKR
Nucleotide Sequence TTGAGTCCTCTACGTGGTGAGCAGGTGGAAGAGGGGGTAGGAGGCAGTGCGCCTCCAGCATCCTCGCCCTCATGCTCCCCACCGTCATGCTCCCCACGGTCTGGCTCTCGGAGGCCACTAGTCTGGCTGCCGGGCCCTGCATGGCCTCTTCATAAGAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab