CircRNA Information

General Information
circRNA Basic Information
CircID chr6:16327945|16328096
Strand +
CircType exon
Host Gene ENSG00000124788.16;
Algorism CIRI2;
Sequence AACAGGGAATAGGTTTACACAAAGCATTGTCCACAGGGCTGGACTACTCCCCGCCCAGCGCTCCCAGGTCTGTCCCCGTGGCCACCACGCTGCCTGCCGCGTACGCCACCCCGCAGCCAGGGACCCCGGTGTCCCCCGTGCAGTACGCTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:16327945|16328096 hsa-miR-30a-5p 0 0 1
chr6:16327945|16328096 hsa-miR-30a-3p 0 0 1
chr6:16327945|16328096 hsa-miR-30d-5p 0 0 1
chr6:16327945|16328096 hsa-miR-30d-3p 0 0 1
chr6:16327945|16328096 hsa-miR-217-5p 0 0 1
chr6:16327945|16328096 hsa-miR-217-3p 0 0 1
chr6:16327945|16328096 hsa-miR-30b-5p 0 0 1
chr6:16327945|16328096 hsa-miR-30b-3p 0 0 1
chr6:16327945|16328096 hsa-miR-30e-5p 0 0 1
chr6:16327945|16328096 hsa-miR-30e-3p 0 0 1
chr6:16327945|16328096 hsa-miR-588 0 1 1
chr6:16327945|16328096 hsa-miR-599 0 0 1
chr6:16327945|16328096 hsa-miR-604 0 0 1
chr6:16327945|16328096 hsa-miR-608 1 1 1
chr6:16327945|16328096 hsa-miR-631 0 0 1
chr6:16327945|16328096 hsa-miR-647 0 0 1
chr6:16327945|16328096 hsa-miR-744-5p 0 0 1
chr6:16327945|16328096 hsa-miR-744-3p 0 0 1
chr6:16327945|16328096 hsa-miR-920 0 0 1
chr6:16327945|16328096 hsa-miR-615-5p 0 1 1
chr6:16327945|16328096 hsa-miR-885-3p 1 1 1
chr6:16327945|16328096 hsa-miR-146b-3p 0 1 1
chr6:16327945|16328096 hsa-miR-339-5p 0 0 1
chr6:16327945|16328096 hsa-miR-509-3-5p 0 0 1
chr6:16327945|16328096 hsa-miR-509-5p 0 0 1
chr6:16327945|16328096 hsa-miR-1274a 0 0 1
chr6:16327945|16328096 hsa-miR-1274b 0 0 1
chr6:16327945|16328096 hsa-miR-30c 0 0 1
chr6:16327945|16328096 hsa-miR-663 0 0 1
chr6:16327945|16328096 hsa-miR-602 0 1 0
chr6:16327945|16328096 hsa-miR-637 1 0 0
chr6:16327945|16328096 hsa-miR-638 1 0 0
chr6:16327945|16328096 hsa-miR-661 1 0 0
chr6:16327945|16328096 hsa-miR-663b 1 0 0
chr6:16327945|16328096 hsa-miR-1268a 1 0 0
chr6:16327945|16328096 hsa-miR-3138 0 1 0
chr6:16327945|16328096 hsa-miR-4281 1 0 0
chr6:16327945|16328096 hsa-miR-3661 0 1 0
chr6:16327945|16328096 hsa-miR-3937 1 1 0
chr6:16327945|16328096 hsa-miR-1268b 1 0 0
chr6:16327945|16328096 hsa-miR-4488 1 0 0
chr6:16327945|16328096 hsa-miR-4651 1 0 0
chr6:16327945|16328096 hsa-miR-4692 0 1 0
chr6:16327945|16328096 hsa-miR-4706 1 1 0
chr6:16327945|16328096 hsa-miR-4734 0 1 0
chr6:16327945|16328096 hsa-miR-5090 1 0 0
chr6:16327945|16328096 hsa-miR-6090 1 1 0
chr6:16327945|16328096 hsa-miR-8072 1 0 0
chr6:16327945|16328096 hsa-miR-8089 1 0 0
chr6:16327945|16328096 hsa-miR-504-3p 1 1 0
chr6:16327945|16328096 hsa-miR-4687-3p 1 0 0
chr6:16327945|16328096 hsa-miR-6720-5p 0 1 0
chr6:16327945|16328096 hsa-miR-7851-3p 1 1 0
chr6:16327945|16328096 hsa-miR-6089 1 0 0
chr6:16327945|16328096 hsa-miR-3192-5p 1 1 0
chr6:16327945|16328096 hsa-miR-3064-5p 0 1 0
chr6:16327945|16328096 hsa-miR-6820-5p 0 1 0
chr6:16327945|16328096 hsa-miR-3187-3p 1 0 0
chr6:16327945|16328096 hsa-miR-4655-5p 0 1 0
chr6:16327945|16328096 hsa-miR-23b-5p 0 1 0
chr6:16327945|16328096 hsa-miR-6798-5p 1 0 0
chr6:16327945|16328096 hsa-miR-6821-5p 1 1 0
chr6:16327945|16328096 hsa-miR-6784-5p 1 0 0
chr6:16327945|16328096 hsa-miR-5010-3p 0 1 0
chr6:16327945|16328096 hsa-miR-1228-5p 1 1 0
chr6:16327945|16328096 hsa-miR-3648 1 0 0
chr6:16327945|16328096 hsa-miR-4750-5p 1 0 0
chr6:16327945|16328096 hsa-miR-10400-5p 1 0 0
chr6:16327945|16328096 hsa-miR-1207-5p 1 0 0
chr6:16327945|16328096 hsa-miR-4763-3p 1 0 0
chr6:16327945|16328096 hsa-miR-6769b-5p 1 0 0
chr6:16327945|16328096 hsa-miR-6787-5p 1 1 0
chr6:16327945|16328096 hsa-miR-6812-5p 1 0 0
chr6:16327945|16328096 hsa-miR-6816-5p 1 0 0
chr6:16327945|16328096 hsa-miR-6870-5p 1 0 0
chr6:16327945|16328096 hsa-miR-1343-5p 1 0 0
chr6:16327945|16328096 hsa-miR-6756-5p 1 0 0
chr6:16327945|16328096 hsa-miR-6808-5p 1 0 0
chr6:16327945|16328096 hsa-miR-4728-5p 1 0 0
chr6:16327945|16328096 hsa-miR-328-5p 1 0 0
chr6:16327945|16328096 hsa-miR-4632-5p 1 0 0
chr6:16327945|16328096 hsa-miR-4649-5p 1 0 0
chr6:16327945|16328096 hsa-miR-4726-5p 1 0 0
chr6:16327945|16328096 hsa-miR-4749-5p 1 1 0
chr6:16327945|16328096 hsa-miR-6777-5p 0 1 0
chr6:16327945|16328096 hsa-miR-6795-5p 1 0 0
chr6:16327945|16328096 hsa-miR-6889-5p 0 1 0
chr6:16327945|16328096 hsa-miR-6885-5p 1 0 0
chr6:16327945|16328096 hsa-miR-939-5p 1 0 0
chr6:16327945|16328096 hsa-miR-10394-3p 1 0 0
chr6:16327945|16328096 hsa-miR-6511a-5p 1 0 0
chr6:16327945|16328096 hsa-miR-6511b-5p 1 0 0
chr6:16327945|16328096 hsa-miR-6731-5p 1 0 0
chr6:16327945|16328096 hsa-miR-4665-5p 1 0 0
chr6:16327945|16328096 hsa-miR-6790-5p 1 0 0
chr6:16327945|16328096 hsa-miR-6791-5p 1 0 0
chr6:16327945|16328096 hsa-miR-9851-5p 1 0 0
chr6:16327945|16328096 hsa-miR-6512-3p 0 1 0
chr6:16327945|16328096 hsa-miR-6504-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:16327945|16328096
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MSPWPPRCLPRTPPRSQGPRCPPCSTL
Nucleotide Sequence CTGTCCCCGTGGCCACCACGCTGCCTGCCGCGTACGCCACCCCGCAGCCAGGGACCCCGGTGTCCCCCGTGCAGTACGCTC
CircID chr6:16327945|16328096
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MSTGLDYSPPSAPRSVPVATTLPAAYATPQPGTPVSPVQYAH
Nucleotide Sequence TTGTCCACAGGGCTGGACTACTCCCCGCCCAGCGCTCCCAGGTCTGTCCCCGTGGCCACCACGCTGCCTGCCGCGTACGCCACCCCGCAGCCAGGGACCCCGGTGTCCCCCGTGCAGTACGCTCAC
CircID chr6:16327945|16328096
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MHGGHRGPWLRGGVRGRQRGGHGDRPGSAGRGVVQPCGQCFV
Nucleotide Sequence CTGCACGGGGGACACCGGGGTCCCTGGCTGCGGGGTGGCGTACGCGGCAGGCAGCGTGGTGGCCACGGGGACAGACCTGGGAGCGCTGGGCGGGGAGTAGTCCAGCCCTGTGGACAATGCTTTGTGTAA
CircID chr6:16327945|16328096
ORF Type ORF4
Protein Length 40
Nucleotide Length 120
Protein Sequence MAAGWRTRQAAWWPRGQTWERWAGSSPALWTMLCVNLFPV
Nucleotide Sequence CTGGCTGCGGGGTGGCGTACGCGGCAGGCAGCGTGGTGGCCACGGGGACAGACCTGGGAGCGCTGGGCGGGGAGTAGTCCAGCCCTGTGGACAATGCTTTGTGTAAACCTATTCCCTGTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab