CircRNA Information

General Information
circRNA Basic Information
CircID chr6:165906590|165906722
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCTCCTATTCCAGGCTTTCTCTGTTCCATGGATTCCTTTTCCTCCCCATGTGTGCATTCTCTGGCACCTGCCAGAGGACCCCTTCCCAGATGTTCCTTCCACCTTACCTTTCCATTATTTCCATTCTTTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:165906590|165906722 hsa-miR-18a-5p 0 0 1
chr6:165906590|165906722 hsa-miR-18a-3p 0 0 1
chr6:165906590|165906722 hsa-miR-186-5p 0 0 1
chr6:165906590|165906722 hsa-miR-186-3p 0 0 1
chr6:165906590|165906722 hsa-miR-18b-5p 0 0 1
chr6:165906590|165906722 hsa-miR-18b-3p 0 0 1
chr6:165906590|165906722 hsa-miR-939-5p 0 0 1
chr6:165906590|165906722 hsa-miR-939-3p 0 0 1
chr6:165906590|165906722 hsa-miR-548m 0 0 1
chr6:165906590|165906722 hsa-miR-1252-5p 0 0 1
chr6:165906590|165906722 hsa-miR-1252-3p 0 0 1
chr6:165906590|165906722 hsa-miR-615-5p 0 0 1
chr6:165906590|165906722 hsa-miR-1207-5p 1 0 1
chr6:165906590|165906722 hsa-miR-1254 0 0 1
chr6:165906590|165906722 hsa-miR-658 1 0 0
chr6:165906590|165906722 hsa-miR-765 1 1 0
chr6:165906590|165906722 hsa-miR-1270 1 0 0
chr6:165906590|165906722 hsa-miR-3125 1 1 0
chr6:165906590|165906722 hsa-miR-3138 1 0 0
chr6:165906590|165906722 hsa-miR-3153 1 1 0
chr6:165906590|165906722 hsa-miR-4314 0 1 0
chr6:165906590|165906722 hsa-miR-4271 1 0 0
chr6:165906590|165906722 hsa-miR-3909 0 1 0
chr6:165906590|165906722 hsa-miR-3936 0 1 0
chr6:165906590|165906722 hsa-miR-4476 1 0 0
chr6:165906590|165906722 hsa-miR-2392 1 0 0
chr6:165906590|165906722 hsa-miR-4533 1 0 0
chr6:165906590|165906722 hsa-miR-4534 1 0 0
chr6:165906590|165906722 hsa-miR-3978 1 0 0
chr6:165906590|165906722 hsa-miR-4657 1 0 0
chr6:165906590|165906722 hsa-miR-4706 1 0 0
chr6:165906590|165906722 hsa-miR-4710 1 0 0
chr6:165906590|165906722 hsa-miR-4739 1 0 0
chr6:165906590|165906722 hsa-miR-5093 1 0 0
chr6:165906590|165906722 hsa-miR-6124 1 1 0
chr6:165906590|165906722 hsa-miR-6128 0 1 0
chr6:165906590|165906722 hsa-miR-6133 1 0 0
chr6:165906590|165906722 hsa-miR-6134 1 0 0
chr6:165906590|165906722 hsa-miR-6745 1 1 0
chr6:165906590|165906722 hsa-miR-7150 0 1 0
chr6:165906590|165906722 hsa-miR-12114 1 0 0
chr6:165906590|165906722 hsa-miR-12120 1 1 0
chr6:165906590|165906722 hsa-miR-150-3p 1 0 0
chr6:165906590|165906722 hsa-miR-6765-5p 1 0 0
chr6:165906590|165906722 hsa-miR-7106-5p 1 1 0
chr6:165906590|165906722 hsa-miR-6825-5p 1 1 0
chr6:165906590|165906722 hsa-miR-6894-5p 1 0 0
chr6:165906590|165906722 hsa-miR-125a-3p 1 0 0
chr6:165906590|165906722 hsa-miR-6799-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6728-5p 1 0 0
chr6:165906590|165906722 hsa-miR-8071 1 0 0
chr6:165906590|165906722 hsa-miR-6833-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6880-5p 1 0 0
chr6:165906590|165906722 hsa-miR-7847-3p 1 0 0
chr6:165906590|165906722 hsa-miR-4709-3p 1 0 0
chr6:165906590|165906722 hsa-miR-6730-5p 1 1 0
chr6:165906590|165906722 hsa-miR-7160-5p 1 0 0
chr6:165906590|165906722 hsa-miR-7845-5p 1 0 0
chr6:165906590|165906722 hsa-miR-1292-5p 1 0 0
chr6:165906590|165906722 hsa-miR-3180-3p 1 0 0
chr6:165906590|165906722 hsa-miR-6748-5p 1 0 0
chr6:165906590|165906722 hsa-miR-3190-3p 1 0 0
chr6:165906590|165906722 hsa-miR-6798-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6810-5p 1 0 0
chr6:165906590|165906722 hsa-miR-204-3p 1 1 0
chr6:165906590|165906722 hsa-miR-1229-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6771-5p 1 0 0
chr6:165906590|165906722 hsa-miR-4713-3p 1 0 0
chr6:165906590|165906722 hsa-miR-149-3p 1 0 0
chr6:165906590|165906722 hsa-miR-7162-3p 1 0 0
chr6:165906590|165906722 hsa-miR-6864-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6505-5p 0 1 0
chr6:165906590|165906722 hsa-miR-1233-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6769b-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6778-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6865-5p 1 0 0
chr6:165906590|165906722 hsa-miR-1343-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6815-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6819-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6851-5p 1 0 0
chr6:165906590|165906722 hsa-miR-1249-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6779-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6780a-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6797-5p 1 1 0
chr6:165906590|165906722 hsa-miR-6808-5p 1 0 0
chr6:165906590|165906722 hsa-miR-7111-5p 1 0 0
chr6:165906590|165906722 hsa-miR-5196-5p 1 1 0
chr6:165906590|165906722 hsa-miR-6780b-5p 1 0 0
chr6:165906590|165906722 hsa-miR-328-5p 1 0 0
chr6:165906590|165906722 hsa-miR-4725-3p 1 0 0
chr6:165906590|165906722 hsa-miR-4726-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6795-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6858-5p 1 0 0
chr6:165906590|165906722 hsa-miR-6883-5p 1 1 0
chr6:165906590|165906722 hsa-miR-6831-5p 1 0 0
chr6:165906590|165906722 hsa-miR-3198 1 0 0
chr6:165906590|165906722 hsa-miR-1914-3p 1 0 0
chr6:165906590|165906722 hsa-miR-3116 0 1 0
chr6:165906590|165906722 hsa-miR-3173-3p 1 0 0
chr6:165906590|165906722 hsa-miR-4646-5p 1 1 0
chr6:165906590|165906722 hsa-miR-4747-5p 1 1 0
chr6:165906590|165906722 hsa-miR-6876-5p 1 0 0
chr6:165906590|165906722 hsa-miR-4716-3p 1 0 0
chr6:165906590|165906722 hsa-miR-6750-5p 0 1 0
chr6:165906590|165906722 hsa-miR-4667-5p 1 1 0
chr6:165906590|165906722 hsa-miR-6849-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr6:165906590|165906722
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MFHGFLFLPMCAFSGTCQRTPSQMFLPPYLSIISILS
Nucleotide Sequence CTGTTCCATGGATTCCTTTTCCTCCCCATGTGTGCATTCTCTGGCACCTGCCAGAGGACCCCTTCCCAGATGTTCCTTCCACCTTACCTTTCCATTATTTCCATTCTTTCA
CircID chr6:165906590|165906722
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MDSFSSPCVHSLAPARGPLPRCSFHLTFPLFPFFH
Nucleotide Sequence ATGGATTCCTTTTCCTCCCCATGTGTGCATTCTCTGGCACCTGCCAGAGGACCCCTTCCCAGATGTTCCTTCCACCTTACCTTTCCATTATTTCCATTCTTTCAC
CircID chr6:165906590|165906722
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MGRGPLAGARECTHGEEKESMEQRKPGIGE
Nucleotide Sequence CTGGGAAGGGGTCCTCTGGCAGGTGCCAGAGAATGCACACATGGGGAGGAAAAGGAATCCATGGAACAGAGAAAGCCTGGAATAGGAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab