CircRNA Information

General Information
circRNA Basic Information
CircID chr6:166929642|166929785
Strand -
CircType exon
Host Gene ENSG00000026297.14;
Algorism CIRI2;
Sequence TCTCAGACCCCGGCTCTCGGCGGCCCCATTTGCCAGCCAGACTTCCTGCTTGGGGGACGGCTGCTCCCCCGGCTCGGTGCAGTTTTGCAGCTGCTGGTCTTGCTTAGTGAGGCACAGTTCTATCTGACCAATTGTCTGTACTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:166929642|166929785 hsa-miR-149-5p 0 0 1
chr6:166929642|166929785 hsa-miR-149-3p 0 0 1
chr6:166929642|166929785 hsa-miR-634 0 0 1
chr6:166929642|166929785 hsa-miR-646 0 1 1
chr6:166929642|166929785 hsa-miR-1323 0 0 1
chr6:166929642|166929785 hsa-miR-939-5p 0 0 1
chr6:166929642|166929785 hsa-miR-939-3p 0 0 1
chr6:166929642|166929785 hsa-miR-548e-5p 0 0 1
chr6:166929642|166929785 hsa-miR-548e-3p 0 0 1
chr6:166929642|166929785 hsa-miR-548o-3p 0 0 1
chr6:166929642|166929785 hsa-miR-548o 0 0 1
chr6:166929642|166929785 hsa-miR-615-3p 0 1 1
chr6:166929642|166929785 hsa-miR-361-3p 0 0 1
chr6:166929642|166929785 hsa-miR-548a-3p 0 0 1
chr6:166929642|166929785 hsa-miR-550 0 0 1
chr6:166929642|166929785 hsa-miR-548f 0 0 1
chr6:166929642|166929785 hsa-miR-638 1 0 0
chr6:166929642|166929785 hsa-miR-3195 1 0 0
chr6:166929642|166929785 hsa-miR-3196 1 0 0
chr6:166929642|166929785 hsa-miR-4479 1 0 0
chr6:166929642|166929785 hsa-miR-4498 1 0 0
chr6:166929642|166929785 hsa-miR-4539 1 0 0
chr6:166929642|166929785 hsa-miR-3960 1 0 0
chr6:166929642|166929785 hsa-miR-4673 1 1 0
chr6:166929642|166929785 hsa-miR-4739 1 0 0
chr6:166929642|166929785 hsa-miR-5787 1 0 0
chr6:166929642|166929785 hsa-miR-6081 0 1 0
chr6:166929642|166929785 hsa-miR-6085 1 0 0
chr6:166929642|166929785 hsa-miR-6165 0 1 0
chr6:166929642|166929785 hsa-miR-9901 1 0 0
chr6:166929642|166929785 hsa-miR-128-1-5p 1 1 0
chr6:166929642|166929785 hsa-miR-4700-3p 1 0 0
chr6:166929642|166929785 hsa-miR-4722-5p 1 1 0
chr6:166929642|166929785 hsa-miR-6829-5p 1 0 0
chr6:166929642|166929785 hsa-miR-3130-3p 0 1 0
chr6:166929642|166929785 hsa-miR-615-5p 1 0 0
chr6:166929642|166929785 hsa-miR-3944-3p 1 0 0
chr6:166929642|166929785 hsa-miR-1908-3p 1 0 0
chr6:166929642|166929785 hsa-miR-4690-5p 1 0 0
chr6:166929642|166929785 hsa-miR-550b-2-5p 0 1 0
chr6:166929642|166929785 hsa-miR-6792-5p 0 1 0
chr6:166929642|166929785 hsa-miR-3675-5p 0 1 0
chr6:166929642|166929785 hsa-miR-1343-5p 1 1 0
chr6:166929642|166929785 hsa-miR-6754-5p 0 1 0
chr6:166929642|166929785 hsa-miR-6803-5p 1 0 0
chr6:166929642|166929785 hsa-miR-6751-5p 1 0 0
chr6:166929642|166929785 hsa-miR-3620-5p 1 0 0
chr6:166929642|166929785 hsa-miR-6846-5p 1 0 0
chr6:166929642|166929785 hsa-miR-6848-5p 1 0 0
chr6:166929642|166929785 hsa-miR-6845-5p 1 0 0
chr6:166929642|166929785 hsa-miR-6724-5p 1 0 0
chr6:166929642|166929785 hsa-miR-6762-5p 1 0 0
chr6:166929642|166929785 hsa-miR-10393-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:166929642|166929785
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MLGGRLLPRLGAVLQLLVLLSEAQFYLTNCLYF
Nucleotide Sequence CTGCTTGGGGGACGGCTGCTCCCCCGGCTCGGTGCAGTTTTGCAGCTGCTGGTCTTGCTTAGTGAGGCACAGTTCTATCTGACCAATTGTCTGTACTTC
CircID chr6:166929642|166929785
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MGDGCSPGSVQFCSCWSCLVRHSSI
Nucleotide Sequence TTGGGGGACGGCTGCTCCCCCGGCTCGGTGCAGTTTTGCAGCTGCTGGTCTTGCTTAGTGAGGCACAGTTCTATCTGA
CircID chr6:166929642|166929785
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MPARLPAWGTAAPPARCSFAAAGLA
Nucleotide Sequence TTGCCAGCCAGACTTCCTGCTTGGGGGACGGCTGCTCCCCCGGCTCGGTGCAGTTTTGCAGCTGCTGGTCTTGCTTAG
CircID chr6:166929642|166929785
ORF Type ORF4
Protein Length 39
Nucleotide Length 117
Protein Sequence MCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLR
Nucleotide Sequence CTGTGCCTCACTAAGCAAGACCAGCAGCTGCAAAACTGCACCGAGCCGGGGGAGCAGCCGTCCCCCAAGCAGGAAGTCTGGCTGGCAAATGGGGCCGCCGAGAGCCGGGGTCTGAGA
CircID chr6:166929642|166929785
ORF Type ORF5
Protein Length 27
Nucleotide Length 81
Protein Sequence MHRAGGAAVPQAGSLAGKWGRREPGSE
Nucleotide Sequence CTGCACCGAGCCGGGGGAGCAGCCGTCCCCCAAGCAGGAAGTCTGGCTGGCAAATGGGGCCGCCGAGAGCCGGGGTCTGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab