CircRNA Information

General Information
circRNA Basic Information
CircID chr6:24840348|24840561
Strand +
CircType exon
Host Gene ENSG00000111913.14;
Algorism CIRI2;
Sequence ATTTAGTGCTTCTAACTTGCAGAATTTGTCCCATTCGACCCACCCCAGCATCCTCTTGAATATTTGGAAATACTTCTCTCCAACTCTGTGCCCATAGCAACTGGCATTGTTTTGCTTGTAATGTTTCTGCATGTGGCCAGCATTATAGAATGCTCCAGGCCAGAGAATGGGATTGCTCCCATGATGCCAGGGCCTGGTCAGGGAAGTGGTGGGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:24840348|24840561 hsa-miR-185-5p 0 0 1
chr6:24840348|24840561 hsa-miR-185-3p 0 0 1
chr6:24840348|24840561 hsa-miR-155-5p 0 0 1
chr6:24840348|24840561 hsa-miR-155-3p 0 0 1
chr6:24840348|24840561 hsa-miR-326 0 0 1
chr6:24840348|24840561 hsa-miR-335-5p 0 0 1
chr6:24840348|24840561 hsa-miR-335-3p 0 0 1
chr6:24840348|24840561 hsa-miR-494-5p 0 0 1
chr6:24840348|24840561 hsa-miR-494-3p 0 0 1
chr6:24840348|24840561 hsa-miR-571 0 0 1
chr6:24840348|24840561 hsa-miR-588 0 0 1
chr6:24840348|24840561 hsa-miR-608 1 1 1
chr6:24840348|24840561 hsa-miR-620 0 0 1
chr6:24840348|24840561 hsa-miR-298 0 0 1
chr6:24840348|24840561 hsa-miR-920 0 0 1
chr6:24840348|24840561 hsa-miR-1179 0 1 1
chr6:24840348|24840561 hsa-miR-1291 0 0 1
chr6:24840348|24840561 hsa-miR-1270 0 0 1
chr6:24840348|24840561 hsa-miR-548p 0 0 1
chr6:24840348|24840561 hsa-miR-1224-3p 0 0 1
chr6:24840348|24840561 hsa-miR-342-5p 0 0 1
chr6:24840348|24840561 hsa-miR-125a-5p 0 0 1
chr6:24840348|24840561 hsa-miR-330-5p 0 0 1
chr6:24840348|24840561 hsa-miR-1302 0 0 1
chr6:24840348|24840561 hsa-miR-1260 0 0 1
chr6:24840348|24840561 hsa-miR-1274a 0 0 1
chr6:24840348|24840561 hsa-miR-1280 0 0 1
chr6:24840348|24840561 hsa-miR-886-5p 0 0 1
chr6:24840348|24840561 hsa-miR-125b 0 0 1
chr6:24840348|24840561 hsa-miR-1308 0 0 1
chr6:24840348|24840561 hsa-miR-323-3p 0 0 1
chr6:24840348|24840561 hsa-miR-544 0 0 1
chr6:24840348|24840561 hsa-miR-1254 0 0 1
chr6:24840348|24840561 hsa-miR-637 1 0 0
chr6:24840348|24840561 hsa-miR-762 1 0 0
chr6:24840348|24840561 hsa-miR-1202 1 0 0
chr6:24840348|24840561 hsa-miR-1260a 0 1 0
chr6:24840348|24840561 hsa-miR-3125 1 0 0
chr6:24840348|24840561 hsa-miR-3132 1 0 0
chr6:24840348|24840561 hsa-miR-3147 1 0 0
chr6:24840348|24840561 hsa-miR-1260b 0 1 0
chr6:24840348|24840561 hsa-miR-3176 0 1 0
chr6:24840348|24840561 hsa-miR-4301 0 1 0
chr6:24840348|24840561 hsa-miR-4298 1 0 0
chr6:24840348|24840561 hsa-miR-4322 1 0 0
chr6:24840348|24840561 hsa-miR-4254 0 1 0
chr6:24840348|24840561 hsa-miR-3621 1 0 0
chr6:24840348|24840561 hsa-miR-3945 1 0 0
chr6:24840348|24840561 hsa-miR-2392 1 0 0
chr6:24840348|24840561 hsa-miR-4507 1 0 0
chr6:24840348|24840561 hsa-miR-1587 1 0 0
chr6:24840348|24840561 hsa-miR-4647 1 0 0
chr6:24840348|24840561 hsa-miR-4651 1 1 0
chr6:24840348|24840561 hsa-miR-5192 1 0 0
chr6:24840348|24840561 hsa-miR-5572 1 0 0
chr6:24840348|24840561 hsa-miR-5739 1 0 0
chr6:24840348|24840561 hsa-miR-5787 1 0 0
chr6:24840348|24840561 hsa-miR-6074 1 1 0
chr6:24840348|24840561 hsa-miR-6086 1 0 0
chr6:24840348|24840561 hsa-miR-8073 1 1 0
chr6:24840348|24840561 hsa-miR-8089 1 0 0
chr6:24840348|24840561 hsa-miR-12118 1 0 0
chr6:24840348|24840561 hsa-miR-12131 0 1 0
chr6:24840348|24840561 hsa-miR-150-3p 1 0 0
chr6:24840348|24840561 hsa-miR-4731-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6747-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6894-5p 1 0 0
chr6:24840348|24840561 hsa-miR-4687-3p 1 0 0
chr6:24840348|24840561 hsa-miR-3692-5p 0 1 0
chr6:24840348|24840561 hsa-miR-6804-5p 1 0 0
chr6:24840348|24840561 hsa-miR-4722-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6741-5p 1 0 0
chr6:24840348|24840561 hsa-miR-197-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6742-5p 1 0 0
chr6:24840348|24840561 hsa-miR-3605-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6748-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6829-5p 1 0 0
chr6:24840348|24840561 hsa-miR-942-5p 0 1 0
chr6:24840348|24840561 hsa-miR-3126-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6782-5p 1 0 0
chr6:24840348|24840561 hsa-miR-5006-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6852-5p 1 0 0
chr6:24840348|24840561 hsa-miR-1226-5p 1 0 0
chr6:24840348|24840561 hsa-miR-296-3p 1 0 0
chr6:24840348|24840561 hsa-miR-6823-5p 1 0 0
chr6:24840348|24840561 hsa-miR-3191-5p 0 1 0
chr6:24840348|24840561 hsa-miR-4743-5p 1 0 0
chr6:24840348|24840561 hsa-miR-4787-5p 1 0 0
chr6:24840348|24840561 hsa-miR-4446-5p 1 1 0
chr6:24840348|24840561 hsa-miR-378a-5p 0 1 0
chr6:24840348|24840561 hsa-miR-6824-5p 1 0 0
chr6:24840348|24840561 hsa-miR-2276-3p 1 1 0
chr6:24840348|24840561 hsa-miR-6877-5p 1 0 0
chr6:24840348|24840561 hsa-miR-516b-5p 1 0 0
chr6:24840348|24840561 hsa-miR-1225-5p 1 0 0
chr6:24840348|24840561 hsa-miR-1250-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6826-5p 1 0 0
chr6:24840348|24840561 hsa-miR-4732-3p 0 1 0
chr6:24840348|24840561 hsa-miR-1911-3p 0 1 0
chr6:24840348|24840561 hsa-miR-6777-3p 1 0 0
chr6:24840348|24840561 hsa-miR-1255b-2-3p 0 1 0
chr6:24840348|24840561 hsa-miR-1229-3p 0 1 0
chr6:24840348|24840561 hsa-miR-589-3p 0 1 0
chr6:24840348|24840561 hsa-miR-221-5p 0 1 0
chr6:24840348|24840561 hsa-miR-1207-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6769b-5p 1 1 0
chr6:24840348|24840561 hsa-miR-6812-5p 1 1 0
chr6:24840348|24840561 hsa-miR-6816-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6870-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6726-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6737-5p 1 1 0
chr6:24840348|24840561 hsa-miR-6756-5p 1 1 0
chr6:24840348|24840561 hsa-miR-6769a-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6803-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6819-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6842-5p 1 0 0
chr6:24840348|24840561 hsa-miR-1249-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6722-3p 1 0 0
chr6:24840348|24840561 hsa-miR-6751-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6763-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6779-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6780a-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6797-5p 1 0 0
chr6:24840348|24840561 hsa-miR-3620-5p 1 0 0
chr6:24840348|24840561 hsa-miR-5189-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6862-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6846-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6848-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6858-5p 1 0 0
chr6:24840348|24840561 hsa-miR-3940-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6856-5p 1 0 0
chr6:24840348|24840561 hsa-miR-6855-5p 1 0 0
chr6:24840348|24840561 hsa-miR-4700-5p 1 0 0
chr6:24840348|24840561 hsa-miR-3679-5p 1 0 0
chr6:24840348|24840561 hsa-miR-541-3p 1 0 0
chr6:24840348|24840561 hsa-miR-6775-3p 0 1 0
chr6:24840348|24840561 hsa-miR-6859-5p 1 0 0
chr6:24840348|24840561 hsa-miR-5006-3p 1 0 0
chr6:24840348|24840561 hsa-miR-5588-5p 0 1 0
chr6:24840348|24840561 hsa-miR-4720-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:24840348|24840561
ORF Type ORF1
Protein Length 50
Nucleotide Length 150
Protein Sequence MEILLSNSVPIATGIVLLVMFLHVASIIECSRPENGIAPMMPGPGQGSGG
Nucleotide Sequence TTGGAAATACTTCTCTCCAACTCTGTGCCCATAGCAACTGGCATTGTTTTGCTTGTAATGTTTCTGCATGTGGCCAGCATTATAGAATGCTCCAGGCCAGAGAATGGGATTGCTCCCATGATGCCAGGGCCTGGTCAGGGAAGTGGTGGG
CircID chr6:24840348|24840561
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MQNLSHSTHPSILLNIWKYFSPTLCP
Nucleotide Sequence TTGCAGAATTTGTCCCATTCGACCCACCCCAGCATCCTCTTGAATATTTGGAAATACTTCTCTCCAACTCTGTGCCCATAG
CircID chr6:24840348|24840561
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MLWAQSWREVFPNIQEDAGVGRMGQILQVRSTK
Nucleotide Sequence TTGCTATGGGCACAGAGTTGGAGAGAAGTATTTCCAAATATTCAAGAGGATGCTGGGGTGGGTCGAATGGGACAAATTCTGCAAGTTAGAAGCACTAAA
CircID chr6:24840348|24840561
ORF Type ORF4
Protein Length 67
Nucleotide Length 201
Protein Sequence MTRPWHHGSNPILWPGAFYNAGHMQKHYKQNNASCYGHRVGEKYFQIFKRMLGWVEWDKFCKLEALN
Nucleotide Sequence CTGACCAGGCCCTGGCATCATGGGAGCAATCCCATTCTCTGGCCTGGAGCATTCTATAATGCTGGCCACATGCAGAAACATTACAAGCAAAACAATGCCAGTTGCTATGGGCACAGAGTTGGAGAGAAGTATTTCCAAATATTCAAGAGGATGCTGGGGTGGGTCGAATGGGACAAATTCTGCAAGTTAGAAGCACTAAAT
CircID chr6:24840348|24840561
ORF Type ORF5
Protein Length 56
Nucleotide Length 171
Protein Sequence MGAIPFSGLEHSIMLATCRNITSKTMPVAMGTELERSISKYSRGCWGGSNGTNSAS
Nucleotide Sequence ATGGGAGCAATCCCATTCTCTGGCCTGGAGCATTCTATAATGCTGGCCACATGCAGAAACATTACAAGCAAAACAATGCCAGTTGCTATGGGCACAGAGTTGGAGAGAAGTATTTCCAAATATTCAAGAGGATGCTGGGGTGGGTCGAATGGGACAAATTCTGCAAGTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab