CircRNA Information

General Information
circRNA Basic Information
CircID chr6:26598074|26598348
Strand +
CircType exon
Host Gene ENSG00000146109.4;
Algorism CIRI2;
Sequence CTCCGCTCTCAAGCGCTGCCTGCGCACCTGGCGCTCAAAGGCGAGGTGCTCGCTGAGGTGGGACCAGGTGAAACGGTGCAAGTACTGTGGGCAGAAAAGAAGAAAAGATCAGGATAGTGCAGATTAGGGAGAAAGATGAGACAAGGGGACAAGGCCAATGAGAGGCCATGGGGATACTTGGGCCAGAGTTGGGGAGAAGGGAGGGTGAGAGGTGTGGCAGAAAGATCTATCTTCTCACCTTGAGGTTCCAAAGATCATAACGGAAGGGGCTGCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:26598074|26598348 hsa-miR-933 0 1 1
chr6:26598074|26598348 hsa-miR-1228-5p 0 0 1
chr6:26598074|26598348 hsa-miR-1228-3p 0 0 1
chr6:26598074|26598348 hsa-miR-1229-5p 0 0 1
chr6:26598074|26598348 hsa-miR-1229-3p 0 0 1
chr6:26598074|26598348 hsa-miR-1253 0 1 1
chr6:26598074|26598348 hsa-miR-885-3p 0 1 1
chr6:26598074|26598348 hsa-miR-339-3p 0 1 1
chr6:26598074|26598348 hsa-miR-1224-3p 0 1 1
chr6:26598074|26598348 hsa-miR-324-3p 0 0 1
chr6:26598074|26598348 hsa-miR-1260 0 0 1
chr6:26598074|26598348 hsa-miR-1280 0 0 1
chr6:26598074|26598348 hsa-miR-9 0 0 1
chr6:26598074|26598348 hsa-miR-1300 0 0 1
chr6:26598074|26598348 hsa-miR-544 0 0 1
chr6:26598074|26598348 hsa-miR-101 0 0 1
chr6:26598074|26598348 hsa-miR-133b 0 1 0
chr6:26598074|26598348 hsa-miR-346 1 1 0
chr6:26598074|26598348 hsa-miR-636 1 0 0
chr6:26598074|26598348 hsa-miR-1260a 0 1 0
chr6:26598074|26598348 hsa-miR-4312 1 1 0
chr6:26598074|26598348 hsa-miR-4287 1 0 0
chr6:26598074|26598348 hsa-miR-4290 1 1 0
chr6:26598074|26598348 hsa-miR-4514 0 1 0
chr6:26598074|26598348 hsa-miR-4660 1 0 0
chr6:26598074|26598348 hsa-miR-4692 0 1 0
chr6:26598074|26598348 hsa-miR-4780 1 0 0
chr6:26598074|26598348 hsa-miR-8055 0 1 0
chr6:26598074|26598348 hsa-miR-8086 1 0 0
chr6:26598074|26598348 hsa-miR-6749-3p 1 0 0
chr6:26598074|26598348 hsa-miR-18a-3p 1 0 0
chr6:26598074|26598348 hsa-miR-4726-3p 1 1 0
chr6:26598074|26598348 hsa-miR-6881-3p 1 0 0
chr6:26598074|26598348 hsa-miR-486-5p 1 0 0
chr6:26598074|26598348 hsa-miR-6875-3p 1 1 0
chr6:26598074|26598348 hsa-miR-6873-3p 1 0 0
chr6:26598074|26598348 hsa-miR-7110-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6832-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6845-3p 1 0 0
chr6:26598074|26598348 hsa-miR-877-3p 1 0 0
chr6:26598074|26598348 hsa-miR-4793-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6774-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6740-3p 1 0 0
chr6:26598074|26598348 hsa-miR-3691-3p 1 0 0
chr6:26598074|26598348 hsa-miR-4713-5p 1 0 0
chr6:26598074|26598348 hsa-miR-7109-3p 1 0 0
chr6:26598074|26598348 hsa-miR-7161-3p 1 1 0
chr6:26598074|26598348 hsa-miR-7113-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6878-3p 1 1 0
chr6:26598074|26598348 hsa-miR-7111-3p 0 1 0
chr6:26598074|26598348 hsa-miR-6830-3p 1 0 0
chr6:26598074|26598348 hsa-miR-1266-3p 1 0 0
chr6:26598074|26598348 hsa-miR-4667-3p 0 1 0
chr6:26598074|26598348 hsa-miR-6769a-3p 0 1 0
chr6:26598074|26598348 hsa-miR-4646-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6870-3p 1 0 0
chr6:26598074|26598348 hsa-miR-211-5p 1 1 0
chr6:26598074|26598348 hsa-miR-1236-3p 1 0 0
chr6:26598074|26598348 hsa-miR-4732-3p 1 0 0
chr6:26598074|26598348 hsa-miR-4758-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6867-3p 1 0 0
chr6:26598074|26598348 hsa-miR-629-3p 1 1 0
chr6:26598074|26598348 hsa-miR-6793-3p 0 1 0
chr6:26598074|26598348 hsa-miR-1910-5p 1 0 0
chr6:26598074|26598348 hsa-miR-106b-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6741-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6782-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6865-3p 0 1 0
chr6:26598074|26598348 hsa-miR-6826-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6886-3p 1 0 0
chr6:26598074|26598348 hsa-miR-5088-3p 1 1 0
chr6:26598074|26598348 hsa-miR-6773-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6738-3p 1 1 0
chr6:26598074|26598348 hsa-miR-6795-3p 1 0 0
chr6:26598074|26598348 hsa-miR-3151-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6777-3p 1 0 0
chr6:26598074|26598348 hsa-miR-937-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6760-3p 1 0 0
chr6:26598074|26598348 hsa-miR-92a-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6883-3p 1 1 0
chr6:26598074|26598348 hsa-miR-204-5p 1 0 0
chr6:26598074|26598348 hsa-miR-130b-5p 1 0 0
chr6:26598074|26598348 hsa-miR-6748-3p 1 0 0
chr6:26598074|26598348 hsa-miR-25-3p 1 0 0
chr6:26598074|26598348 hsa-miR-3192-3p 1 0 0
chr6:26598074|26598348 hsa-miR-4433b-5p 1 0 0
chr6:26598074|26598348 hsa-miR-6846-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6780b-3p 1 1 0
chr6:26598074|26598348 hsa-miR-4727-5p 0 1 0
chr6:26598074|26598348 hsa-miR-135a-5p 0 1 0
chr6:26598074|26598348 hsa-miR-6731-3p 1 0 0
chr6:26598074|26598348 hsa-miR-550b-3p 1 0 0
chr6:26598074|26598348 hsa-miR-133a-3p 0 1 0
chr6:26598074|26598348 hsa-miR-26a-1-3p 1 0 0
chr6:26598074|26598348 hsa-miR-320a-5p 1 1 0
chr6:26598074|26598348 hsa-miR-4685-3p 1 1 0
chr6:26598074|26598348 hsa-miR-449c-5p 0 1 0
chr6:26598074|26598348 hsa-miR-4632-5p 1 0 0
chr6:26598074|26598348 hsa-miR-6511a-3p 1 1 0
chr6:26598074|26598348 hsa-miR-6756-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6784-3p 1 1 0
chr6:26598074|26598348 hsa-miR-6862-3p 1 1 0
chr6:26598074|26598348 hsa-miR-6810-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6775-3p 1 0 0
chr6:26598074|26598348 hsa-miR-4723-3p 1 0 0
chr6:26598074|26598348 hsa-miR-483-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6511b-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6891-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6744-3p 0 1 0
chr6:26598074|26598348 hsa-miR-362-5p 0 1 0
chr6:26598074|26598348 hsa-miR-4768-5p 1 0 0
chr6:26598074|26598348 hsa-miR-4769-3p 1 0 0
chr6:26598074|26598348 hsa-miR-6807-3p 1 0 0
chr6:26598074|26598348 hsa-miR-7155-3p 0 1 0
chr6:26598074|26598348 hsa-miR-412-3p 1 1 0
chr6:26598074|26598348 hsa-miR-550a-3p 1 0 0
chr6:26598074|26598348 hsa-miR-3064-3p 1 1 0
chr6:26598074|26598348 hsa-miR-135b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:26598074|26598348
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MPAHLALKGEVLAEVGPGETVQVLWAEKKKRSG
Nucleotide Sequence CTGCCTGCGCACCTGGCGCTCAAAGGCGAGGTGCTCGCTGAGGTGGGACCAGGTGAAACGGTGCAAGTACTGTGGGCAGAAAAGAAGAAAAGATCAGGATAG
CircID chr6:26598074|26598348
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MRQGDKANERPWGYLGQSWGEGRVRGVAERSIFSP
Nucleotide Sequence ATGAGACAAGGGGACAAGGCCAATGAGAGGCCATGGGGATACTTGGGCCAGAGTTGGGGAGAAGGGAGGGTGAGAGGTGTGGCAGAAAGATCTATCTTCTCACCTTGA
CircID chr6:26598074|26598348
ORF Type ORF3
Protein Length 35
Nucleotide Length 108
Protein Sequence MRTWRSKARCSLRWDQVKRCKYCGQKRRKDQDSAD
Nucleotide Sequence CTGCGCACCTGGCGCTCAAAGGCGAGGTGCTCGCTGAGGTGGGACCAGGTGAAACGGTGCAAGTACTGTGGGCAGAAAAGAAGAAAAGATCAGGATAGTGCAGATTAG
CircID chr6:26598074|26598348
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MGILGPELGRREGERCGRKIYLLTLRFQRS
Nucleotide Sequence ATGGGGATACTTGGGCCAGAGTTGGGGAGAAGGGAGGGTGAGAGGTGTGGCAGAAAGATCTATCTTCTCACCTTGAGGTTCCAAAGATCATAA
CircID chr6:26598074|26598348
ORF Type ORF5
Protein Length 80
Nucleotide Length 243
Protein Sequence MEPQGEKIDLSATPLTLPSPQLWPKYPHGLSLALSPCLIFLPNLHYPDLFFFSAHSTCTVSPGPTSASTSPLSARCAGSA
Nucleotide Sequence TTGGAACCTCAAGGTGAGAAGATAGATCTTTCTGCCACACCTCTCACCCTCCCTTCTCCCCAACTCTGGCCCAAGTATCCCCATGGCCTCTCATTGGCCTTGTCCCCTTGTCTCATCTTTCTCCCTAATCTGCACTATCCTGATCTTTTCTTCTTTTCTGCCCACAGTACTTGCACCGTTTCACCTGGTCCCACCTCAGCGAGCACCTCGCCTTTGAGCGCCAGGTGCGCAGGCAGCGCTTGA
CircID chr6:26598074|26598348
ORF Type ORF6
Protein Length 61
Nucleotide Length 186
Protein Sequence MPHLSPSLLPNSGPSIPMASHWPCPLVSSFSLICTILIFSSFLPTVLAPFHLVPPQRAPRL
Nucleotide Sequence CTGCCACACCTCTCACCCTCCCTTCTCCCCAACTCTGGCCCAAGTATCCCCATGGCCTCTCATTGGCCTTGTCCCCTTGTCTCATCTTTCTCCCTAATCTGCACTATCCTGATCTTTTCTTCTTTTCTGCCCACAGTACTTGCACCGTTTCACCTGGTCCCACCTCAGCGAGCACCTCGCCTTTGA
CircID chr6:26598074|26598348
ORF Type ORF7
Protein Length 27
Nucleotide Length 81
Protein Sequence MHRFTWSHLSEHLAFERQVRRQRLRAE
Nucleotide Sequence TTGCACCGTTTCACCTGGTCCCACCTCAGCGAGCACCTCGCCTTTGAGCGCCAGGTGCGCAGGCAGCGCTTGAGAGCGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab