CircRNA Information

General Information
circRNA Basic Information
CircID chr6:28398004|28398126
Strand -
CircType exon
Host Gene ENSG00000158691.13;
Algorism CIRI2;
Sequence CTGCTCTCCTGGTTCATCCAGTTCTCTCTCTAAATCCTCCAGCACAGTCACCACCTCCTCCCCACTCTCTGGATGCTGCTCCTGCACCCAGGCCTGGAGCTCCTCAGGTAGGATGGTCAGGAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:28398004|28398126 hsa-miR-15a-5p 0 0 1
chr6:28398004|28398126 hsa-miR-15a-3p 0 0 1
chr6:28398004|28398126 hsa-miR-107 0 1 1
chr6:28398004|28398126 hsa-miR-15b-5p 0 0 1
chr6:28398004|28398126 hsa-miR-15b-3p 0 0 1
chr6:28398004|28398126 hsa-miR-134-5p 0 0 1
chr6:28398004|28398126 hsa-miR-134-3p 0 0 1
chr6:28398004|28398126 hsa-miR-146a-5p 0 0 1
chr6:28398004|28398126 hsa-miR-146a-3p 0 0 1
chr6:28398004|28398126 hsa-miR-195-5p 0 0 1
chr6:28398004|28398126 hsa-miR-195-3p 0 0 1
chr6:28398004|28398126 hsa-miR-424-5p 0 0 1
chr6:28398004|28398126 hsa-miR-424-3p 0 0 1
chr6:28398004|28398126 hsa-miR-497-5p 0 0 1
chr6:28398004|28398126 hsa-miR-497-3p 0 0 1
chr6:28398004|28398126 hsa-miR-591 0 0 1
chr6:28398004|28398126 hsa-miR-661 0 1 1
chr6:28398004|28398126 hsa-miR-765 1 0 1
chr6:28398004|28398126 hsa-miR-708-5p 0 0 1
chr6:28398004|28398126 hsa-miR-708-3p 0 0 1
chr6:28398004|28398126 hsa-miR-665 0 0 1
chr6:28398004|28398126 hsa-miR-939-5p 0 0 1
chr6:28398004|28398126 hsa-miR-939-3p 0 0 1
chr6:28398004|28398126 hsa-miR-943 0 0 1
chr6:28398004|28398126 hsa-miR-1200 0 0 1
chr6:28398004|28398126 hsa-miR-1286 0 0 1
chr6:28398004|28398126 hsa-miR-1287-5p 0 0 1
chr6:28398004|28398126 hsa-miR-1287-3p 0 0 1
chr6:28398004|28398126 hsa-miR-1303 0 0 1
chr6:28398004|28398126 hsa-miR-1243 0 1 1
chr6:28398004|28398126 hsa-miR-1255a 0 1 1
chr6:28398004|28398126 hsa-miR-491-5p 0 0 1
chr6:28398004|28398126 hsa-miR-525-5p 0 0 1
chr6:28398004|28398126 hsa-miR-28-5p 0 1 1
chr6:28398004|28398126 hsa-miR-520a-5p 0 0 1
chr6:28398004|28398126 hsa-miR-146b-5p 0 1 1
chr6:28398004|28398126 hsa-miR-103 0 0 1
chr6:28398004|28398126 hsa-miR-16 0 0 1
chr6:28398004|28398126 hsa-miR-1255b 0 0 1
chr6:28398004|28398126 hsa-miR-198 1 0 0
chr6:28398004|28398126 hsa-miR-608 1 0 0
chr6:28398004|28398126 hsa-miR-1293 1 0 0
chr6:28398004|28398126 hsa-miR-1265 1 0 0
chr6:28398004|28398126 hsa-miR-1268a 1 0 0
chr6:28398004|28398126 hsa-miR-1275 1 0 0
chr6:28398004|28398126 hsa-miR-1321 1 0 0
chr6:28398004|28398126 hsa-miR-3131 1 0 0
chr6:28398004|28398126 hsa-miR-3139 0 1 0
chr6:28398004|28398126 hsa-miR-3141 1 0 0
chr6:28398004|28398126 hsa-miR-3175 1 0 0
chr6:28398004|28398126 hsa-miR-4270 1 1 0
chr6:28398004|28398126 hsa-miR-4271 1 0 0
chr6:28398004|28398126 hsa-miR-3652 1 0 0
chr6:28398004|28398126 hsa-miR-1268b 1 0 0
chr6:28398004|28398126 hsa-miR-4430 1 0 0
chr6:28398004|28398126 hsa-miR-4450 1 1 0
chr6:28398004|28398126 hsa-miR-3135b 1 0 0
chr6:28398004|28398126 hsa-miR-3689c 1 0 0
chr6:28398004|28398126 hsa-miR-4481 1 1 0
chr6:28398004|28398126 hsa-miR-4483 1 0 0
chr6:28398004|28398126 hsa-miR-4487 1 0 0
chr6:28398004|28398126 hsa-miR-4505 1 0 0
chr6:28398004|28398126 hsa-miR-2392 1 0 0
chr6:28398004|28398126 hsa-miR-4525 1 0 0
chr6:28398004|28398126 hsa-miR-4533 1 0 0
chr6:28398004|28398126 hsa-miR-4644 1 0 0
chr6:28398004|28398126 hsa-miR-4651 1 0 0
chr6:28398004|28398126 hsa-miR-4658 1 0 0
chr6:28398004|28398126 hsa-miR-4663 1 0 0
chr6:28398004|28398126 hsa-miR-4675 1 0 0
chr6:28398004|28398126 hsa-miR-4688 1 0 0
chr6:28398004|28398126 hsa-miR-4706 1 1 0
chr6:28398004|28398126 hsa-miR-4739 1 0 0
chr6:28398004|28398126 hsa-miR-4784 1 0 0
chr6:28398004|28398126 hsa-miR-5192 1 0 0
chr6:28398004|28398126 hsa-miR-5698 1 1 0
chr6:28398004|28398126 hsa-miR-5739 1 0 0
chr6:28398004|28398126 hsa-miR-5787 1 0 0
chr6:28398004|28398126 hsa-miR-6127 1 0 0
chr6:28398004|28398126 hsa-miR-6134 1 1 0
chr6:28398004|28398126 hsa-miR-7974 1 0 0
chr6:28398004|28398126 hsa-miR-8052 1 0 0
chr6:28398004|28398126 hsa-miR-8085 1 0 0
chr6:28398004|28398126 hsa-miR-12114 1 0 0
chr6:28398004|28398126 hsa-miR-4433b-3p 1 0 0
chr6:28398004|28398126 hsa-miR-92a-2-5p 1 0 0
chr6:28398004|28398126 hsa-miR-4731-5p 1 0 0
chr6:28398004|28398126 hsa-miR-629-5p 1 0 0
chr6:28398004|28398126 hsa-miR-4433a-3p 1 0 0
chr6:28398004|28398126 hsa-miR-3150a-3p 1 0 0
chr6:28398004|28398126 hsa-miR-7106-5p 1 1 0
chr6:28398004|28398126 hsa-miR-6825-5p 1 1 0
chr6:28398004|28398126 hsa-miR-6894-5p 1 1 0
chr6:28398004|28398126 hsa-miR-6857-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6799-5p 1 0 0
chr6:28398004|28398126 hsa-miR-766-5p 1 0 0
chr6:28398004|28398126 hsa-miR-5187-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6515-5p 0 1 0
chr6:28398004|28398126 hsa-miR-6880-5p 1 0 0
chr6:28398004|28398126 hsa-miR-7847-3p 1 0 0
chr6:28398004|28398126 hsa-miR-4722-5p 1 1 0
chr6:28398004|28398126 hsa-miR-6741-5p 0 1 0
chr6:28398004|28398126 hsa-miR-6776-5p 0 1 0
chr6:28398004|28398126 hsa-miR-6742-5p 1 0 0
chr6:28398004|28398126 hsa-miR-3605-5p 1 0 0
chr6:28398004|28398126 hsa-miR-3151-5p 1 0 0
chr6:28398004|28398126 hsa-miR-3180-3p 1 0 0
chr6:28398004|28398126 hsa-miR-6748-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6732-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6805-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6798-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6760-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6782-5p 1 0 0
chr6:28398004|28398126 hsa-miR-30b-3p 1 0 0
chr6:28398004|28398126 hsa-miR-6786-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6835-5p 1 0 0
chr6:28398004|28398126 hsa-miR-7109-5p 1 0 0
chr6:28398004|28398126 hsa-miR-1229-5p 1 0 0
chr6:28398004|28398126 hsa-miR-1908-5p 1 0 0
chr6:28398004|28398126 hsa-miR-1228-5p 1 0 0
chr6:28398004|28398126 hsa-miR-296-3p 1 0 0
chr6:28398004|28398126 hsa-miR-6771-5p 1 0 0
chr6:28398004|28398126 hsa-let-7b-5p 1 0 0
chr6:28398004|28398126 hsa-miR-4713-3p 1 0 0
chr6:28398004|28398126 hsa-miR-6749-5p 1 1 0
chr6:28398004|28398126 hsa-miR-4787-5p 1 0 0
chr6:28398004|28398126 hsa-miR-103a-3p 0 1 0
chr6:28398004|28398126 hsa-miR-149-3p 1 0 0
chr6:28398004|28398126 hsa-miR-3162-5p 1 0 0
chr6:28398004|28398126 hsa-miR-3925-5p 0 1 0
chr6:28398004|28398126 hsa-miR-5584-5p 1 0 0
chr6:28398004|28398126 hsa-miR-4776-5p 0 1 0
chr6:28398004|28398126 hsa-let-7i-5p 1 0 0
chr6:28398004|28398126 hsa-miR-3619-3p 0 1 0
chr6:28398004|28398126 hsa-miR-1233-5p 1 0 0
chr6:28398004|28398126 hsa-miR-3689b-3p 1 0 0
chr6:28398004|28398126 hsa-miR-4763-3p 1 0 0
chr6:28398004|28398126 hsa-miR-6769b-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6778-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6787-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6865-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6870-5p 1 0 0
chr6:28398004|28398126 hsa-miR-1343-5p 1 0 0
chr6:28398004|28398126 hsa-miR-5001-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6726-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6737-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6752-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6754-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6756-5p 1 1 0
chr6:28398004|28398126 hsa-miR-6769a-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6803-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6815-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6819-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6842-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6851-5p 1 1 0
chr6:28398004|28398126 hsa-miR-7107-5p 1 0 0
chr6:28398004|28398126 hsa-miR-7110-5p 1 0 0
chr6:28398004|28398126 hsa-miR-11181-3p 1 1 0
chr6:28398004|28398126 hsa-miR-6751-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6763-5p 1 1 0
chr6:28398004|28398126 hsa-miR-6779-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6780a-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6875-5p 1 0 0
chr6:28398004|28398126 hsa-miR-7111-5p 1 0 0
chr6:28398004|28398126 hsa-miR-3620-5p 1 0 0
chr6:28398004|28398126 hsa-miR-4728-5p 1 0 0
chr6:28398004|28398126 hsa-miR-5196-5p 1 0 0
chr6:28398004|28398126 hsa-miR-1237-5p 1 0 0
chr6:28398004|28398126 hsa-miR-328-5p 1 0 0
chr6:28398004|28398126 hsa-miR-3689a-3p 1 0 0
chr6:28398004|28398126 hsa-miR-4632-5p 1 0 0
chr6:28398004|28398126 hsa-miR-4649-5p 1 0 0
chr6:28398004|28398126 hsa-miR-4685-5p 1 0 0
chr6:28398004|28398126 hsa-miR-4745-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6729-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6795-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6846-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6848-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6858-5p 1 1 0
chr6:28398004|28398126 hsa-miR-6883-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6887-5p 1 0 0
chr6:28398004|28398126 hsa-miR-4723-5p 1 0 0
chr6:28398004|28398126 hsa-miR-4758-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6758-5p 1 1 0
chr6:28398004|28398126 hsa-miR-6856-5p 1 0 0
chr6:28398004|28398126 hsa-miR-10398-3p 1 0 0
chr6:28398004|28398126 hsa-miR-3679-5p 1 0 0
chr6:28398004|28398126 hsa-miR-4747-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6750-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6785-5p 1 1 0
chr6:28398004|28398126 hsa-miR-4667-5p 1 1 0
chr6:28398004|28398126 hsa-miR-342-5p 1 0 0
chr6:28398004|28398126 hsa-miR-6504-5p 1 0 0
chr6:28398004|28398126 hsa-miR-7153-5p 0 1 0
chr6:28398004|28398126 hsa-miR-7157-3p 1 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:28398004|28398126
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MVHPVLSLNPPAQSPPPPHSLDAAPAPRPGAPQVGWSG
Nucleotide Sequence CTGGTTCATCCAGTTCTCTCTCTAAATCCTCCAGCACAGTCACCACCTCCTCCCCACTCTCTGGATGCTGCTCCTGCACCCAGGCCTGGAGCTCCTCAGGTAGGATGGTCAGGA
CircID chr6:28398004|28398126
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MTILPEELQAWVQEQHPESGEEVVTVLEDLERELDEPGEQ
Nucleotide Sequence CTGACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGTGCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAG
CircID chr6:28398004|28398126
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MGAGAASREWGGGGDCAGGFRERTG
Nucleotide Sequence CTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGTGCTGGAGGATTTAGAGAGAGAACTGGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab