CircRNA Information

General Information
circRNA Basic Information
CircID chr6:2948213|2948462
Strand -
CircType exon
Host Gene ENSG00000124570.16;
Algorism CIRI2;
Sequence GGATAAGGCCACTTGGGTTGCAGGCACACTGTGGAGTGTCAGGGGACAGAGAGGAGAGGGGCTGCACACCAAGACTGCCCTGTCCTCACGGAGAGGAAAAGCGGCCGCAGAAGAGAATCCCGTTGGTCTTGCTGTGCTGGATGAAGAAAAGGAAGGGGTGGTCGGCGCAGAAGCGGGGGACGAATCTGGCACACCGCATCATCATGATGGCAGCTGTGGCGGCTGCAGCCTCCGTGCCTTCCTCATTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:2948213|2948462 hsa-miR-22-5p 0 0 1
chr6:2948213|2948462 hsa-miR-22-3p 0 0 1
chr6:2948213|2948462 hsa-miR-433-5p 0 0 1
chr6:2948213|2948462 hsa-miR-433-3p 0 0 1
chr6:2948213|2948462 hsa-miR-506-5p 0 0 1
chr6:2948213|2948462 hsa-miR-506-3p 0 0 1
chr6:2948213|2948462 hsa-miR-564 0 1 1
chr6:2948213|2948462 hsa-miR-648 0 0 1
chr6:2948213|2948462 hsa-miR-1227-5p 0 0 1
chr6:2948213|2948462 hsa-miR-1227-3p 0 0 1
chr6:2948213|2948462 hsa-miR-1236-5p 0 0 1
chr6:2948213|2948462 hsa-miR-1236-3p 0 0 1
chr6:2948213|2948462 hsa-miR-1238-5p 0 0 1
chr6:2948213|2948462 hsa-miR-1238-3p 0 0 1
chr6:2948213|2948462 hsa-miR-1272 0 1 1
chr6:2948213|2948462 hsa-miR-1322 0 0 1
chr6:2948213|2948462 hsa-miR-1224-5p 0 1 1
chr6:2948213|2948462 hsa-miR-485-5p 0 1 1
chr6:2948213|2948462 hsa-miR-1184 0 0 1
chr6:2948213|2948462 hsa-miR-331-3p 0 0 1
chr6:2948213|2948462 hsa-miR-338-3p 0 0 1
chr6:2948213|2948462 hsa-miR-128 0 0 1
chr6:2948213|2948462 hsa-miR-550 0 0 1
chr6:2948213|2948462 hsa-miR-124 0 0 1
chr6:2948213|2948462 hsa-miR-1470 1 0 0
chr6:2948213|2948462 hsa-miR-4302 0 1 0
chr6:2948213|2948462 hsa-miR-4274 1 0 0
chr6:2948213|2948462 hsa-miR-3909 1 0 0
chr6:2948213|2948462 hsa-miR-3972 1 0 0
chr6:2948213|2948462 hsa-miR-4734 1 0 0
chr6:2948213|2948462 hsa-miR-4739 1 0 0
chr6:2948213|2948462 hsa-miR-5090 0 1 0
chr6:2948213|2948462 hsa-miR-197-3p 1 0 0
chr6:2948213|2948462 hsa-miR-4726-3p 1 0 0
chr6:2948213|2948462 hsa-miR-6892-3p 1 1 0
chr6:2948213|2948462 hsa-miR-6881-3p 1 0 0
chr6:2948213|2948462 hsa-miR-3622a-5p 0 1 0
chr6:2948213|2948462 hsa-miR-6873-3p 1 0 0
chr6:2948213|2948462 hsa-miR-7110-3p 1 0 0
chr6:2948213|2948462 hsa-miR-6817-3p 0 1 0
chr6:2948213|2948462 hsa-miR-6845-3p 1 1 0
chr6:2948213|2948462 hsa-miR-877-3p 1 1 0
chr6:2948213|2948462 hsa-miR-6728-3p 1 0 0
chr6:2948213|2948462 hsa-miR-6882-3p 1 0 0
chr6:2948213|2948462 hsa-miR-1226-5p 0 1 0
chr6:2948213|2948462 hsa-miR-6763-3p 1 0 0
chr6:2948213|2948462 hsa-miR-642b-5p 1 0 0
chr6:2948213|2948462 hsa-miR-6821-3p 1 0 0
chr6:2948213|2948462 hsa-miR-7111-3p 1 1 0
chr6:2948213|2948462 hsa-miR-6736-3p 1 0 0
chr6:2948213|2948462 hsa-miR-7156-3p 0 1 0
chr6:2948213|2948462 hsa-miR-6769a-3p 1 1 0
chr6:2948213|2948462 hsa-miR-6825-3p 1 0 0
chr6:2948213|2948462 hsa-miR-3120-3p 0 1 0
chr6:2948213|2948462 hsa-miR-1237-3p 1 1 0
chr6:2948213|2948462 hsa-miR-6743-3p 1 0 0
chr6:2948213|2948462 hsa-miR-6730-3p 0 1 0
chr6:2948213|2948462 hsa-miR-4772-3p 0 1 0
chr6:2948213|2948462 hsa-miR-6828-3p 1 0 0
chr6:2948213|2948462 hsa-miR-6778-3p 1 0 0
chr6:2948213|2948462 hsa-miR-4746-3p 1 0 0
chr6:2948213|2948462 hsa-miR-216a-3p 0 1 0
chr6:2948213|2948462 hsa-miR-6746-3p 0 1 0
chr6:2948213|2948462 hsa-miR-6826-3p 1 1 0
chr6:2948213|2948462 hsa-miR-1914-5p 1 0 0
chr6:2948213|2948462 hsa-miR-6886-3p 1 0 0
chr6:2948213|2948462 hsa-miR-4749-3p 1 0 0
chr6:2948213|2948462 hsa-miR-6760-3p 1 0 0
chr6:2948213|2948462 hsa-miR-5004-5p 0 1 0
chr6:2948213|2948462 hsa-miR-3124-3p 1 1 0
chr6:2948213|2948462 hsa-miR-6748-3p 1 0 0
chr6:2948213|2948462 hsa-miR-6812-3p 1 0 0
chr6:2948213|2948462 hsa-miR-1249-3p 1 0 0
chr6:2948213|2948462 hsa-miR-4714-3p 0 1 0
chr6:2948213|2948462 hsa-miR-4787-3p 1 0 0
chr6:2948213|2948462 hsa-miR-124-3p 0 1 0
chr6:2948213|2948462 hsa-miR-6879-5p 0 1 0
chr6:2948213|2948462 hsa-miR-3127-3p 1 0 0
chr6:2948213|2948462 hsa-miR-320a-5p 0 1 0
chr6:2948213|2948462 hsa-miR-4685-3p 1 0 0
chr6:2948213|2948462 hsa-miR-1237-5p 1 0 0
chr6:2948213|2948462 hsa-miR-4632-5p 1 1 0
chr6:2948213|2948462 hsa-miR-6848-5p 1 0 0
chr6:2948213|2948462 hsa-miR-1271-3p 0 1 0
chr6:2948213|2948462 hsa-miR-6877-3p 1 0 0
chr6:2948213|2948462 hsa-miR-6876-5p 0 1 0
chr6:2948213|2948462 hsa-miR-6756-3p 1 1 0
chr6:2948213|2948462 hsa-miR-6801-3p 1 0 0
chr6:2948213|2948462 hsa-miR-6810-3p 1 0 0
chr6:2948213|2948462 hsa-miR-10392-3p 1 0 0
chr6:2948213|2948462 hsa-miR-3059-5p 1 1 0
chr6:2948213|2948462 hsa-miR-3622a-3p 1 0 0
chr6:2948213|2948462 hsa-miR-4723-3p 1 1 0
chr6:2948213|2948462 hsa-miR-6511b-3p 1 0 0
chr6:2948213|2948462 hsa-miR-6769b-3p 1 1 0
chr6:2948213|2948462 hsa-miR-6819-3p 1 0 0
chr6:2948213|2948462 hsa-miR-6817-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:2948213|2948462
ORF Type ORF1
Protein Length 43
Nucleotide Length 132
Protein Sequence MGCRHTVECQGTERRGAAHQDCPVLTERKSGRRRESRWSCCAG
Nucleotide Sequence TTGGGTTGCAGGCACACTGTGGAGTGTCAGGGGACAGAGAGGAGAGGGGCTGCACACCAAGACTGCCCTGTCCTCACGGAGAGGAAAAGCGGCCGCAGAAGAGAATCCCGTTGGTCTTGCTGTGCTGGATGA
CircID chr6:2948213|2948462
ORF Type ORF2
Protein Length 74
Nucleotide Length 222
Protein Sequence MWSVRGQRGEGLHTKTALSSRRGKAAAEENPVGLAVLDEEKEGVVGAEAGDESGTPHHHDGSCGGCSLRAFLID
Nucleotide Sequence CTGTGGAGTGTCAGGGGACAGAGAGGAGAGGGGCTGCACACCAAGACTGCCCTGTCCTCACGGAGAGGAAAAGCGGCCGCAGAAGAGAATCCCGTTGGTCTTGCTGTGCTGGATGAAGAAAAGGAAGGGGTGGTCGGCGCAGAAGCGGGGGACGAATCTGGCACACCGCATCATCATGATGGCAGCTGTGGCGGCTGCAGCCTCCGTGCCTTCCTCATTGAC
CircID chr6:2948213|2948462
ORF Type ORF3
Protein Length 77
Nucleotide Length 231
Protein Sequence MQAHCGVSGDREERGCTPRLPCPHGEEKRPQKRIPLVLLCWMKKRKGWSAQKRGTNLAHRIIMMAAVAAAASVPSSL
Nucleotide Sequence TTGCAGGCACACTGTGGAGTGTCAGGGGACAGAGAGGAGAGGGGCTGCACACCAAGACTGCCCTGTCCTCACGGAGAGGAAAAGCGGCCGCAGAAGAGAATCCCGTTGGTCTTGCTGTGCTGGATGAAGAAAAGGAAGGGGTGGTCGGCGCAGAAGCGGGGGACGAATCTGGCACACCGCATCATCATGATGGCAGCTGTGGCGGCTGCAGCCTCCGTGCCTTCCTCATTG
CircID chr6:2948213|2948462
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence MMMRCARFVPRFCADHPFLFFIQHSKTNGILFCGRFSSP
Nucleotide Sequence ATGATGATGCGGTGTGCCAGATTCGTCCCCCGCTTCTGCGCCGACCACCCCTTCCTTTTCTTCATCCAGCACAGCAAGACCAACGGGATTCTCTTCTGCGGCCGCTTTTCCTCTCCGTGA
CircID chr6:2948213|2948462
ORF Type ORF5
Protein Length 43
Nucleotide Length 132
Protein Sequence MRRPPLPFLHPAQQDQRDSLLRPLFLSVRTGQSWCAAPLLSVP
Nucleotide Sequence CTGCGCCGACCACCCCTTCCTTTTCTTCATCCAGCACAGCAAGACCAACGGGATTCTCTTCTGCGGCCGCTTTTCCTCTCCGTGAGGACAGGGCAGTCTTGGTGTGCAGCCCCTCTCCTCTCTGTCCCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab