CircRNA Information

General Information
circRNA Basic Information
CircID chr6:2949395|2949626
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTATGTTTGGACATAAAAGAAACTCCCAGCGCCACCTGTAATGCGGCACTCCGTAGATCCTCCAAGTCGGCTCTGTCTACTGCAACTCTGCCCATCTCAGCTGAGGGCAGTGCCACTGTCCAGTGGTCAAAAGCCCTGGAGTGCCCCTGACTCCTGTCTTTCTCTCACACCCTGTGTCTGACTCACTGGCAAATTATATTGGCTCTACCTCGAGAATATAACAAAATCTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:2949395|2949626 hsa-let-7b-5p 0 0 1
chr6:2949395|2949626 hsa-let-7b-3p 0 0 1
chr6:2949395|2949626 hsa-let-7c-5p 0 0 1
chr6:2949395|2949626 hsa-let-7c-3p 0 0 1
chr6:2949395|2949626 hsa-let-7d-5p 0 0 1
chr6:2949395|2949626 hsa-let-7d-3p 0 0 1
chr6:2949395|2949626 hsa-let-7e-5p 0 0 1
chr6:2949395|2949626 hsa-let-7e-3p 0 0 1
chr6:2949395|2949626 hsa-miR-98-5p 0 0 1
chr6:2949395|2949626 hsa-miR-98-3p 0 0 1
chr6:2949395|2949626 hsa-let-7g-5p 0 0 1
chr6:2949395|2949626 hsa-let-7g-3p 0 0 1
chr6:2949395|2949626 hsa-let-7i-5p 0 0 1
chr6:2949395|2949626 hsa-let-7i-3p 0 0 1
chr6:2949395|2949626 hsa-miR-143-5p 0 0 1
chr6:2949395|2949626 hsa-miR-143-3p 0 0 1
chr6:2949395|2949626 hsa-miR-432-5p 0 0 1
chr6:2949395|2949626 hsa-miR-432-3p 0 0 1
chr6:2949395|2949626 hsa-miR-552-5p 0 0 1
chr6:2949395|2949626 hsa-miR-552-3p 0 0 1
chr6:2949395|2949626 hsa-miR-411-5p 0 0 1
chr6:2949395|2949626 hsa-miR-411-3p 0 0 1
chr6:2949395|2949626 hsa-miR-765 0 0 1
chr6:2949395|2949626 hsa-miR-890 0 0 1
chr6:2949395|2949626 hsa-miR-936 0 1 1
chr6:2949395|2949626 hsa-miR-1202 0 0 1
chr6:2949395|2949626 hsa-miR-1324 0 0 1
chr6:2949395|2949626 hsa-miR-508-5p 0 0 1
chr6:2949395|2949626 hsa-miR-1207-3p 0 0 1
chr6:2949395|2949626 hsa-miR-516a-5p 0 1 1
chr6:2949395|2949626 hsa-miR-220c 0 0 1
chr6:2949395|2949626 hsa-let-7a 0 0 1
chr6:2949395|2949626 hsa-let-7f 0 0 1
chr6:2949395|2949626 hsa-miR-768-5p 0 0 1
chr6:2949395|2949626 hsa-miR-371-3p 0 0 1
chr6:2949395|2949626 hsa-miR-612 0 1 0
chr6:2949395|2949626 hsa-miR-762 1 0 0
chr6:2949395|2949626 hsa-miR-3132 1 0 0
chr6:2949395|2949626 hsa-miR-3138 1 0 0
chr6:2949395|2949626 hsa-miR-3147 1 0 0
chr6:2949395|2949626 hsa-miR-3174 0 1 0
chr6:2949395|2949626 hsa-miR-4306 0 1 0
chr6:2949395|2949626 hsa-miR-4252 1 0 0
chr6:2949395|2949626 hsa-miR-4270 1 0 0
chr6:2949395|2949626 hsa-miR-3937 1 0 0
chr6:2949395|2949626 hsa-miR-1587 1 0 0
chr6:2949395|2949626 hsa-miR-4656 1 0 0
chr6:2949395|2949626 hsa-miR-4688 1 0 0
chr6:2949395|2949626 hsa-miR-5693 0 1 0
chr6:2949395|2949626 hsa-miR-6088 1 0 0
chr6:2949395|2949626 hsa-miR-6860 1 1 0
chr6:2949395|2949626 hsa-miR-6747-5p 1 1 0
chr6:2949395|2949626 hsa-miR-4433a-3p 1 1 0
chr6:2949395|2949626 hsa-miR-6765-5p 1 0 0
chr6:2949395|2949626 hsa-miR-6894-5p 1 1 0
chr6:2949395|2949626 hsa-miR-125a-3p 1 0 0
chr6:2949395|2949626 hsa-miR-766-5p 1 0 0
chr6:2949395|2949626 hsa-miR-4722-5p 1 0 0
chr6:2949395|2949626 hsa-miR-1301-3p 1 0 0
chr6:2949395|2949626 hsa-miR-7160-5p 1 0 0
chr6:2949395|2949626 hsa-miR-6727-5p 1 0 0
chr6:2949395|2949626 hsa-miR-197-5p 1 0 0
chr6:2949395|2949626 hsa-miR-6805-5p 1 0 0
chr6:2949395|2949626 hsa-miR-185-5p 1 1 0
chr6:2949395|2949626 hsa-miR-1229-5p 1 1 0
chr6:2949395|2949626 hsa-miR-6516-5p 0 1 0
chr6:2949395|2949626 hsa-miR-937-5p 1 1 0
chr6:2949395|2949626 hsa-miR-6789-5p 1 0 0
chr6:2949395|2949626 hsa-miR-3162-5p 1 0 0
chr6:2949395|2949626 hsa-miR-6877-5p 1 0 0
chr6:2949395|2949626 hsa-miR-423-5p 1 0 0
chr6:2949395|2949626 hsa-let-7f-5p 0 1 0
chr6:2949395|2949626 hsa-let-7a-5p 0 1 0
chr6:2949395|2949626 hsa-miR-4638-5p 0 1 0
chr6:2949395|2949626 hsa-miR-1233-5p 1 0 0
chr6:2949395|2949626 hsa-miR-4763-3p 1 0 0
chr6:2949395|2949626 hsa-miR-6778-5p 1 1 0
chr6:2949395|2949626 hsa-miR-6865-5p 1 0 0
chr6:2949395|2949626 hsa-miR-6743-5p 1 0 0
chr6:2949395|2949626 hsa-miR-6752-5p 1 0 0
chr6:2949395|2949626 hsa-miR-6756-5p 1 0 0
chr6:2949395|2949626 hsa-miR-6815-5p 1 1 0
chr6:2949395|2949626 hsa-miR-6851-5p 1 0 0
chr6:2949395|2949626 hsa-miR-7110-5p 1 0 0
chr6:2949395|2949626 hsa-miR-6797-5p 1 0 0
chr6:2949395|2949626 hsa-miR-3620-5p 1 0 0
chr6:2949395|2949626 hsa-miR-328-5p 1 0 0
chr6:2949395|2949626 hsa-miR-4685-5p 0 1 0
chr6:2949395|2949626 hsa-miR-6777-5p 1 0 0
chr6:2949395|2949626 hsa-miR-6889-5p 1 0 0
chr6:2949395|2949626 hsa-miR-939-5p 1 0 0
chr6:2949395|2949626 hsa-miR-6511a-5p 1 0 0
chr6:2949395|2949626 hsa-miR-6856-5p 1 0 0
chr6:2949395|2949626 hsa-miR-7151-3p 1 0 0
chr6:2949395|2949626 hsa-miR-6859-5p 0 1 0
chr6:2949395|2949626 hsa-miR-4676-5p 1 0 0
chr6:2949395|2949626 hsa-miR-6733-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:2949395|2949626
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence MDIKETPSATCNAALRRSSKSALSTATLPISAEGSATVQWSKALECP
Nucleotide Sequence TTGGACATAAAAGAAACTCCCAGCGCCACCTGTAATGCGGCACTCCGTAGATCCTCCAAGTCGGCTCTGTCTACTGCAACTCTGCCCATCTCAGCTGAGGGCAGTGCCACTGTCCAGTGGTCAAAAGCCCTGGAGTGCCCCTGA
CircID chr6:2949395|2949626
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MSFSHTLCLTHWQIILALPREYNKI
Nucleotide Sequence CTGTCTTTCTCTCACACCCTGTGTCTGACTCACTGGCAAATTATATTGGCTCTACCTCGAGAATATAACAAAATCTGA
CircID chr6:2949395|2949626
ORF Type ORF3
Protein Length 46
Nucleotide Length 141
Protein Sequence MRHSVDPPSRLCLLQLCPSQLRAVPLSSGQKPWSAPDSCLSLTPCV
Nucleotide Sequence ATGCGGCACTCCGTAGATCCTCCAAGTCGGCTCTGTCTACTGCAACTCTGCCCATCTCAGCTGAGGGCAGTGCCACTGTCCAGTGGTCAAAAGCCCTGGAGTGCCCCTGACTCCTGTCTTTCTCTCACACCCTGTGTCTGA
CircID chr6:2949395|2949626
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MPSAEMGRVAVDRADLEDLRSAALQVALGVSFMSKH
Nucleotide Sequence CTGCCCTCAGCTGAGATGGGCAGAGTTGCAGTAGACAGAGCCGACTTGGAGGATCTACGGAGTGCCGCATTACAGGTGGCGCTGGGAGTTTCTTTTATGTCCAAACAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab