CircRNA Information

General Information
circRNA Basic Information
CircID chr6:29942978|29943319
Strand -
CircType exon
Host Gene ENSG00000206503.10;
Algorism CIRI2;
Sequence CGAGTGGACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCGGGGGCGCAGGTCAGGACCCCTCATCCCCCACGGACGGGCCAGGTCGCCCACAGTCTCCGGGTCCGAGATCCACCCCGAAGCCGCGGGACCCCGAGACCCTTGCCCCGGGAGAGGCCCAGGCGCCTTTACCCGGTTTCATTTTCAGTTTAGGCCAAAAATCCCCCCGGGTTGGTCGGGGCTGGGCGGGGCTCGGGGGACTGGGCTGACCGCGGGGTCGGGGCCAGGTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGTCGGACGGGCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:29942978|29943319 hsa-miR-146a-5p 0 0 1
chr6:29942978|29943319 hsa-miR-146a-3p 0 0 1
chr6:29942978|29943319 hsa-miR-589-5p 0 0 1
chr6:29942978|29943319 hsa-miR-589-3p 0 0 1
chr6:29942978|29943319 hsa-miR-608 1 1 1
chr6:29942978|29943319 hsa-miR-625-5p 0 0 1
chr6:29942978|29943319 hsa-miR-625-3p 0 0 1
chr6:29942978|29943319 hsa-miR-631 1 1 1
chr6:29942978|29943319 hsa-miR-661 1 1 1
chr6:29942978|29943319 hsa-miR-662 1 1 1
chr6:29942978|29943319 hsa-miR-668-5p 0 0 1
chr6:29942978|29943319 hsa-miR-668-3p 0 0 1
chr6:29942978|29943319 hsa-miR-1182 1 1 1
chr6:29942978|29943319 hsa-miR-1290 0 0 1
chr6:29942978|29943319 hsa-miR-1247-5p 0 0 1
chr6:29942978|29943319 hsa-miR-1247-3p 0 0 1
chr6:29942978|29943319 hsa-miR-1255a 0 0 1
chr6:29942978|29943319 hsa-miR-548g-5p 0 0 1
chr6:29942978|29943319 hsa-miR-548g-3p 0 0 1
chr6:29942978|29943319 hsa-miR-1275 0 1 1
chr6:29942978|29943319 hsa-miR-1225-3p 0 1 1
chr6:29942978|29943319 hsa-miR-615-3p 0 1 1
chr6:29942978|29943319 hsa-miR-615-5p 1 1 1
chr6:29942978|29943319 hsa-miR-490-3p 0 1 1
chr6:29942978|29943319 hsa-miR-423-5p 0 0 1
chr6:29942978|29943319 hsa-miR-566 0 0 1
chr6:29942978|29943319 hsa-miR-146b-5p 0 0 1
chr6:29942978|29943319 hsa-miR-524-3p 0 1 1
chr6:29942978|29943319 hsa-miR-525-3p 0 1 1
chr6:29942978|29943319 hsa-miR-1255b 0 0 1
chr6:29942978|29943319 hsa-miR-323-3p 0 0 1
chr6:29942978|29943319 hsa-miR-453 0 0 1
chr6:29942978|29943319 hsa-miR-762 1 0 0
chr6:29942978|29943319 hsa-miR-760 1 0 0
chr6:29942978|29943319 hsa-miR-1181 1 0 0
chr6:29942978|29943319 hsa-miR-663b 1 0 0
chr6:29942978|29943319 hsa-miR-1471 1 0 0
chr6:29942978|29943319 hsa-miR-1539 0 1 0
chr6:29942978|29943319 hsa-miR-4318 0 1 0
chr6:29942978|29943319 hsa-miR-4281 1 0 0
chr6:29942978|29943319 hsa-miR-4440 1 0 0
chr6:29942978|29943319 hsa-miR-4449 1 0 0
chr6:29942978|29943319 hsa-miR-4494 0 1 0
chr6:29942978|29943319 hsa-miR-4525 0 1 0
chr6:29942978|29943319 hsa-miR-4741 1 0 0
chr6:29942978|29943319 hsa-miR-5090 0 1 0
chr6:29942978|29943319 hsa-miR-5093 0 1 0
chr6:29942978|29943319 hsa-miR-5705 1 1 0
chr6:29942978|29943319 hsa-miR-134-3p 0 1 0
chr6:29942978|29943319 hsa-miR-4665-3p 1 0 0
chr6:29942978|29943319 hsa-miR-4726-3p 0 1 0
chr6:29942978|29943319 hsa-miR-5187-5p 0 1 0
chr6:29942978|29943319 hsa-miR-7114-5p 1 0 0
chr6:29942978|29943319 hsa-miR-6840-5p 0 1 0
chr6:29942978|29943319 hsa-miR-6727-5p 1 1 0
chr6:29942978|29943319 hsa-miR-3180-3p 1 0 0
chr6:29942978|29943319 hsa-miR-6786-5p 1 0 0
chr6:29942978|29943319 hsa-miR-939-3p 0 1 0
chr6:29942978|29943319 hsa-miR-4763-5p 1 0 0
chr6:29942978|29943319 hsa-miR-6763-3p 1 0 0
chr6:29942978|29943319 hsa-miR-7108-3p 0 1 0
chr6:29942978|29943319 hsa-miR-6784-5p 1 0 0
chr6:29942978|29943319 hsa-miR-4640-5p 1 0 0
chr6:29942978|29943319 hsa-miR-6757-3p 1 0 0
chr6:29942978|29943319 hsa-miR-3677-3p 1 0 0
chr6:29942978|29943319 hsa-miR-378a-5p 0 1 0
chr6:29942978|29943319 hsa-miR-7156-3p 1 0 0
chr6:29942978|29943319 hsa-miR-5010-5p 0 1 0
chr6:29942978|29943319 hsa-miR-4707-5p 1 1 0
chr6:29942978|29943319 hsa-miR-873-3p 0 1 0
chr6:29942978|29943319 hsa-miR-6859-3p 1 0 0
chr6:29942978|29943319 hsa-miR-4763-3p 1 0 0
chr6:29942978|29943319 hsa-miR-6870-5p 1 0 0
chr6:29942978|29943319 hsa-miR-6775-5p 1 1 0
chr6:29942978|29943319 hsa-miR-6737-5p 1 1 0
chr6:29942978|29943319 hsa-miR-6756-5p 1 0 0
chr6:29942978|29943319 hsa-miR-6803-5p 1 0 0
chr6:29942978|29943319 hsa-miR-6819-5p 1 0 0
chr6:29942978|29943319 hsa-miR-6722-3p 1 0 0
chr6:29942978|29943319 hsa-miR-6751-5p 1 0 0
chr6:29942978|29943319 hsa-miR-1909-3p 1 0 0
chr6:29942978|29943319 hsa-miR-4649-5p 1 0 0
chr6:29942978|29943319 hsa-miR-6729-5p 1 0 0
chr6:29942978|29943319 hsa-miR-6848-5p 1 0 0
chr6:29942978|29943319 hsa-miR-10396a-3p 1 0 0
chr6:29942978|29943319 hsa-miR-10396b-3p 1 0 0
chr6:29942978|29943319 hsa-miR-1914-3p 0 1 0
chr6:29942978|29943319 hsa-miR-10398-3p 0 1 0
chr6:29942978|29943319 hsa-miR-4472 0 1 0
chr6:29942978|29943319 hsa-miR-6724-5p 1 0 0
chr6:29942978|29943319 hsa-miR-6791-5p 1 0 0
chr6:29942978|29943319 hsa-miR-10392-3p 1 1 0
chr6:29942978|29943319 hsa-miR-6744-3p 0 1 0
chr6:29942978|29943319 hsa-miR-6783-3p 0 1 0
chr6:29942978|29943319 hsa-miR-363-5p 0 1 0
chr6:29942978|29943319 hsa-miR-4690-3p 0 1 0
chr6:29942978|29943319 hsa-miR-10399-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr6:29942978|29943319
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MVGAGRGSGDWADRGVGARFSHHPDNVWLRRGVGRA
Nucleotide Sequence TTGGTCGGGGCTGGGCGGGGCTCGGGGGACTGGGCTGACCGCGGGGTCGGGGCCAGGTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGTCGGACGGGCG
CircID chr6:29942978|29943319
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MGGARGTGLTAGSGPGSHTIQIMYGCDVGSDG
Nucleotide Sequence CTGGGCGGGGCTCGGGGGACTGGGCTGACCGCGGGGTCGGGGCCAGGTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGTCGGACGGG
CircID chr6:29942978|29943319
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MARPWGMRGPDLRPRPGSLTGLALVVVAAQGPQVHS
Nucleotide Sequence CTGGCCCGTCCGTGGGGGATGAGGGGTCCTGACCTGCGCCCCCGGCCGGGGTCACTCACCGGCCTCGCTCTGGTTGTAGTAGCCGCGCAGGGTCCCCAGGTCCACTCG
CircID chr6:29942978|29943319
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MAPTPRSAQSPEPRPAPTNPGGFLA
Nucleotide Sequence CTGGCCCCGACCCCGCGGTCAGCCCAGTCCCCCGAGCCCCGCCCAGCCCCGACCAACCCGGGGGGATTTTTGGCCTAA
CircID chr6:29942978|29943319
ORF Type ORF5
Protein Length 32
Nucleotide Length 99
Protein Sequence MGLSRGKGLGVPRLRGGSRTRRLWATWPVRGG
Nucleotide Sequence CTGGGCCTCTCCCGGGGCAAGGGTCTCGGGGTCCCGCGGCTTCGGGGTGGATCTCGGACCCGGAGACTGTGGGCGACCTGGCCCGTCCGTGGGGGATGA
CircID chr6:29942978|29943319
ORF Type ORF6
Protein Length 76
Nucleotide Length 231
Protein Sequence MDGVRTWPRPRGQPSPPSPAQPRPTRGDFWPKLKMKPGKGAWASPGARVSGSRGFGVDLGPGDCGRPGPSVGDEGS
Nucleotide Sequence CTGGATGGTGTGAGAACCTGGCCCCGACCCCGCGGTCAGCCCAGTCCCCCGAGCCCCGCCCAGCCCCGACCAACCCGGGGGGATTTTTGGCCTAAACTGAAAATGAAACCGGGTAAAGGCGCCTGGGCCTCTCCCGGGGCAAGGGTCTCGGGGTCCCGCGGCTTCGGGGTGGATCTCGGACCCGGAGACTGTGGGCGACCTGGCCCGTCCGTGGGGGATGAGGGGTCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab