CircRNA Information

General Information
circRNA Basic Information
CircID chr6:29944578|29945281
Strand +
CircType exon
Host Gene ENSG00000206503.10;
Algorism CIRI2;
Sequence CTTTACAAGCTGTGAGGGACACATCAGAGCCCTGGGCACTGTCACTGCCTGGGGTAGAACAAAAACAGAACCTGGTCAGATCCCACAGAAGATGTGGCTAGAGGAGGAATTGTGAGGTGGGTGGGCTCCCCCATGGGCTCCCAAACACAATATCCCAAGGACCTCAGGCATCAGCCTCCTTCATACTTACTTGCAGCCTGAGTGTAACTCCCTCCTTTTCTATCTGAGCTCTTCCTCCTCCACATCACGGCAGCGACCACAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:29944578|29945281 hsa-miR-34a-5p 0 0 1
chr6:29944578|29945281 hsa-miR-34a-3p 0 0 1
chr6:29944578|29945281 hsa-miR-375-5p 0 0 1
chr6:29944578|29945281 hsa-miR-375-3p 0 0 1
chr6:29944578|29945281 hsa-miR-449a 0 0 1
chr6:29944578|29945281 hsa-miR-484 0 0 1
chr6:29944578|29945281 hsa-miR-510-5p 0 0 1
chr6:29944578|29945281 hsa-miR-510-3p 0 0 1
chr6:29944578|29945281 hsa-miR-625-5p 0 0 1
chr6:29944578|29945281 hsa-miR-625-3p 0 0 1
chr6:29944578|29945281 hsa-miR-638 1 0 1
chr6:29944578|29945281 hsa-miR-639 0 0 1
chr6:29944578|29945281 hsa-miR-449b-5p 0 0 1
chr6:29944578|29945281 hsa-miR-449b-3p 0 0 1
chr6:29944578|29945281 hsa-miR-765 1 1 1
chr6:29944578|29945281 hsa-miR-760 0 0 1
chr6:29944578|29945281 hsa-miR-920 0 0 1
chr6:29944578|29945281 hsa-miR-939-5p 0 0 1
chr6:29944578|29945281 hsa-miR-939-3p 0 0 1
chr6:29944578|29945281 hsa-miR-1251-5p 0 0 1
chr6:29944578|29945281 hsa-miR-1251-3p 0 0 1
chr6:29944578|29945281 hsa-miR-1275 0 0 1
chr6:29944578|29945281 hsa-miR-1252-5p 0 0 1
chr6:29944578|29945281 hsa-miR-1252-3p 0 0 1
chr6:29944578|29945281 hsa-miR-485-5p 0 1 1
chr6:29944578|29945281 hsa-miR-1224-3p 0 1 1
chr6:29944578|29945281 hsa-miR-769-3p 0 1 1
chr6:29944578|29945281 hsa-miR-34c-5p 0 0 1
chr6:29944578|29945281 hsa-miR-450b-3p 0 0 1
chr6:29944578|29945281 hsa-miR-542-3p 0 0 1
chr6:29944578|29945281 hsa-miR-768-3p 0 0 1
chr6:29944578|29945281 hsa-miR-1201 0 0 1
chr6:29944578|29945281 hsa-miR-650 1 0 0
chr6:29944578|29945281 hsa-miR-544b 0 1 0
chr6:29944578|29945281 hsa-miR-4271 1 0 0
chr6:29944578|29945281 hsa-miR-3911 1 0 0
chr6:29944578|29945281 hsa-miR-3916 1 0 0
chr6:29944578|29945281 hsa-miR-3929 0 1 0
chr6:29944578|29945281 hsa-miR-3937 1 0 0
chr6:29944578|29945281 hsa-miR-4437 1 0 0
chr6:29944578|29945281 hsa-miR-4476 1 0 0
chr6:29944578|29945281 hsa-miR-4478 0 1 0
chr6:29944578|29945281 hsa-miR-4488 1 0 0
chr6:29944578|29945281 hsa-miR-4510 0 1 0
chr6:29944578|29945281 hsa-miR-4654 1 1 0
chr6:29944578|29945281 hsa-miR-4656 1 0 0
chr6:29944578|29945281 hsa-miR-4682 1 0 0
chr6:29944578|29945281 hsa-miR-4692 0 1 0
chr6:29944578|29945281 hsa-miR-4739 1 0 0
chr6:29944578|29945281 hsa-miR-4779 0 1 0
chr6:29944578|29945281 hsa-miR-5190 0 1 0
chr6:29944578|29945281 hsa-miR-5193 0 1 0
chr6:29944578|29945281 hsa-miR-5698 0 1 0
chr6:29944578|29945281 hsa-miR-6077 0 1 0
chr6:29944578|29945281 hsa-miR-6124 1 0 0
chr6:29944578|29945281 hsa-miR-6127 1 0 0
chr6:29944578|29945281 hsa-miR-6129 0 1 0
chr6:29944578|29945281 hsa-miR-6133 1 0 0
chr6:29944578|29945281 hsa-miR-8075 0 1 0
chr6:29944578|29945281 hsa-miR-8085 1 0 0
chr6:29944578|29945281 hsa-miR-8089 1 0 0
chr6:29944578|29945281 hsa-miR-12118 1 0 0
chr6:29944578|29945281 hsa-miR-6747-5p 1 0 0
chr6:29944578|29945281 hsa-miR-7106-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6825-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6894-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6854-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6833-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6880-5p 1 0 0
chr6:29944578|29945281 hsa-miR-7847-3p 1 1 0
chr6:29944578|29945281 hsa-miR-4695-5p 1 0 0
chr6:29944578|29945281 hsa-miR-4653-3p 1 0 0
chr6:29944578|29945281 hsa-miR-4722-5p 1 0 0
chr6:29944578|29945281 hsa-miR-7154-3p 1 0 0
chr6:29944578|29945281 hsa-miR-7160-5p 1 0 0
chr6:29944578|29945281 hsa-miR-197-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6796-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6732-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6827-5p 0 1 0
chr6:29944578|29945281 hsa-miR-6798-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6760-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6881-5p 1 0 0
chr6:29944578|29945281 hsa-miR-5008-5p 1 0 0
chr6:29944578|29945281 hsa-miR-221-3p 0 1 0
chr6:29944578|29945281 hsa-miR-3934-3p 1 1 0
chr6:29944578|29945281 hsa-miR-6852-5p 0 1 0
chr6:29944578|29945281 hsa-miR-5088-5p 1 1 0
chr6:29944578|29945281 hsa-miR-3944-3p 1 0 0
chr6:29944578|29945281 hsa-miR-3691-5p 1 0 0
chr6:29944578|29945281 hsa-miR-3160-3p 1 0 0
chr6:29944578|29945281 hsa-miR-149-3p 1 0 0
chr6:29944578|29945281 hsa-miR-6830-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6824-5p 1 0 0
chr6:29944578|29945281 hsa-miR-2276-3p 0 1 0
chr6:29944578|29945281 hsa-miR-6886-5p 1 0 0
chr6:29944578|29945281 hsa-miR-5010-5p 1 0 0
chr6:29944578|29945281 hsa-miR-7112-5p 0 1 0
chr6:29944578|29945281 hsa-miR-887-5p 0 1 0
chr6:29944578|29945281 hsa-miR-1250-5p 1 0 0
chr6:29944578|29945281 hsa-miR-1287-3p 0 1 0
chr6:29944578|29945281 hsa-miR-181a-5p 1 0 0
chr6:29944578|29945281 hsa-miR-1233-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6778-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6787-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6870-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6754-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6803-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6813-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6819-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6851-5p 1 0 0
chr6:29944578|29945281 hsa-miR-11181-3p 1 1 0
chr6:29944578|29945281 hsa-miR-1249-5p 1 1 0
chr6:29944578|29945281 hsa-miR-6797-5p 1 1 0
chr6:29944578|29945281 hsa-miR-7111-5p 1 1 0
chr6:29944578|29945281 hsa-miR-4728-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6780b-5p 1 0 0
chr6:29944578|29945281 hsa-miR-449c-5p 0 1 0
chr6:29944578|29945281 hsa-miR-4649-5p 1 0 0
chr6:29944578|29945281 hsa-miR-4685-5p 0 1 0
chr6:29944578|29945281 hsa-miR-4725-3p 1 0 0
chr6:29944578|29945281 hsa-miR-6738-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6794-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6795-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6848-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6858-5p 1 0 0
chr6:29944578|29945281 hsa-miR-4723-5p 0 1 0
chr6:29944578|29945281 hsa-miR-6831-5p 1 0 0
chr6:29944578|29945281 hsa-miR-34b-5p 0 1 0
chr6:29944578|29945281 hsa-miR-6511b-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6731-5p 1 0 0
chr6:29944578|29945281 hsa-miR-3173-3p 1 1 0
chr6:29944578|29945281 hsa-miR-4747-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6891-5p 1 1 0
chr6:29944578|29945281 hsa-miR-4716-3p 1 0 0
chr6:29944578|29945281 hsa-miR-6753-3p 1 0 0
chr6:29944578|29945281 hsa-miR-550a-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6862-3p 0 1 0
chr6:29944578|29945281 hsa-miR-4756-5p 1 0 0
chr6:29944578|29945281 hsa-miR-6764-5p 0 1 0
chr6:29944578|29945281 hsa-miR-2682-5p 0 1 0
chr6:29944578|29945281 hsa-miR-6764-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:29944578|29945281
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MGTVTAWGRTKTEPGQIPQKMWLEEEL
Nucleotide Sequence CTGGGCACTGTCACTGCCTGGGGTAGAACAAAAACAGAACCTGGTCAGATCCCACAGAAGATGTGGCTAGAGGAGGAATTGTGA
CircID chr6:29944578|29945281
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MWDLTRFCFCSTPGSDSAQGSDVSLTACK
Nucleotide Sequence CTGTGGGATCTGACCAGGTTCTGTTTTTGTTCTACCCCAGGCAGTGACAGTGCCCAGGGCTCTGATGTGTCCCTCACAGCTTGTAAA
CircID chr6:29944578|29945281
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MMPEVLGILCLGAHGGAHPPHNSSSSHIFCGI
Nucleotide Sequence CTGATGCCTGAGGTCCTTGGGATATTGTGTTTGGGAGCCCATGGGGGAGCCCACCCACCTCACAATTCCTCCTCTAGCCACATCTTCTGTGGGATCTGA
CircID chr6:29944578|29945281
ORF Type ORF4
Protein Length 41
Nucleotide Length 126
Protein Sequence MRSLGYCVWEPMGEPTHLTIPPLATSSVGSDQVLFLFYPRQ
Nucleotide Sequence CTGAGGTCCTTGGGATATTGTGTTTGGGAGCCCATGGGGGAGCCCACCCACCTCACAATTCCTCCTCTAGCCACATCTTCTGTGGGATCTGACCAGGTTCTGTTTTTGTTCTACCCCAGGCAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab