CircRNA Information

General Information
circRNA Basic Information
CircID chr6:30069872|30070106
Strand +
CircType exon
Host Gene ENSG00000204619.6;
Algorism CIRI2;
Sequence CCCAATCTCTTTGCTCCCTCCCTCTTCCTTCCTCTCCCAGAGACCCAGGTCCCTGGGACTATATTGGATCTGTCTCTGAAGCTGAAAAACAAAAGGCAGAGGAGACAGTCGGCTCTAAGTGACCAATCTCAAGCCAGCTTTGTCAGAAATCCTAAATAACAGGAGAAGGGTGGGAAGAAAGGATATGATTATTTCTTATTCCATTTTCCATAAGAGGTGAGAATGACAAGGACCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:30069872|30070106 hsa-miR-320a-5p 0 0 1
chr6:30069872|30070106 hsa-miR-320a-3p 0 0 1
chr6:30069872|30070106 hsa-miR-326 0 0 1
chr6:30069872|30070106 hsa-miR-492 0 0 1
chr6:30069872|30070106 hsa-miR-593-5p 0 0 1
chr6:30069872|30070106 hsa-miR-593-3p 0 0 1
chr6:30069872|30070106 hsa-miR-616-5p 0 0 1
chr6:30069872|30070106 hsa-miR-616-3p 0 0 1
chr6:30069872|30070106 hsa-miR-631 0 0 1
chr6:30069872|30070106 hsa-miR-651-5p 0 0 1
chr6:30069872|30070106 hsa-miR-651-3p 0 0 1
chr6:30069872|30070106 hsa-miR-1229-5p 0 0 1
chr6:30069872|30070106 hsa-miR-1229-3p 0 0 1
chr6:30069872|30070106 hsa-miR-1252-5p 0 0 1
chr6:30069872|30070106 hsa-miR-1252-3p 0 0 1
chr6:30069872|30070106 hsa-miR-1321 0 0 1
chr6:30069872|30070106 hsa-miR-193a-5p 0 0 1
chr6:30069872|30070106 hsa-miR-1224-3p 0 0 1
chr6:30069872|30070106 hsa-miR-501-5p 0 0 1
chr6:30069872|30070106 hsa-miR-509-3p 0 0 1
chr6:30069872|30070106 hsa-miR-188-3p 0 0 1
chr6:30069872|30070106 hsa-miR-320b 1 1 1
chr6:30069872|30070106 hsa-miR-320c 1 1 1
chr6:30069872|30070106 hsa-miR-330-5p 0 0 1
chr6:30069872|30070106 hsa-miR-362-5p 0 0 1
chr6:30069872|30070106 hsa-miR-320d 1 1 1
chr6:30069872|30070106 hsa-miR-876-5p 0 0 1
chr6:30069872|30070106 hsa-miR-1260 0 0 1
chr6:30069872|30070106 hsa-miR-1280 0 0 1
chr6:30069872|30070106 hsa-miR-661 1 1 0
chr6:30069872|30070106 hsa-miR-658 1 0 0
chr6:30069872|30070106 hsa-miR-765 1 0 0
chr6:30069872|30070106 hsa-miR-760 1 0 0
chr6:30069872|30070106 hsa-miR-2909 0 1 0
chr6:30069872|30070106 hsa-miR-3125 1 1 0
chr6:30069872|30070106 hsa-miR-3132 1 0 0
chr6:30069872|30070106 hsa-miR-3141 1 0 0
chr6:30069872|30070106 hsa-miR-3154 1 0 0
chr6:30069872|30070106 hsa-miR-3167 0 1 0
chr6:30069872|30070106 hsa-miR-320e 0 1 0
chr6:30069872|30070106 hsa-miR-4298 1 1 0
chr6:30069872|30070106 hsa-miR-4271 1 0 0
chr6:30069872|30070106 hsa-miR-3649 0 1 0
chr6:30069872|30070106 hsa-miR-3661 0 1 0
chr6:30069872|30070106 hsa-miR-3916 0 1 0
chr6:30069872|30070106 hsa-miR-4429 0 1 0
chr6:30069872|30070106 hsa-miR-4476 1 1 0
chr6:30069872|30070106 hsa-miR-2392 1 0 0
chr6:30069872|30070106 hsa-miR-4510 1 1 0
chr6:30069872|30070106 hsa-miR-4516 1 0 0
chr6:30069872|30070106 hsa-miR-4526 1 0 0
chr6:30069872|30070106 hsa-miR-4533 1 0 0
chr6:30069872|30070106 hsa-miR-4651 1 0 0
chr6:30069872|30070106 hsa-miR-4739 1 1 0
chr6:30069872|30070106 hsa-miR-5698 1 1 0
chr6:30069872|30070106 hsa-miR-6088 1 0 0
chr6:30069872|30070106 hsa-miR-6090 1 0 0
chr6:30069872|30070106 hsa-miR-6124 1 0 0
chr6:30069872|30070106 hsa-miR-6127 1 1 0
chr6:30069872|30070106 hsa-miR-6129 1 0 0
chr6:30069872|30070106 hsa-miR-6130 1 0 0
chr6:30069872|30070106 hsa-miR-6133 1 1 0
chr6:30069872|30070106 hsa-miR-6165 1 0 0
chr6:30069872|30070106 hsa-miR-8085 1 0 0
chr6:30069872|30070106 hsa-miR-12118 1 0 0
chr6:30069872|30070106 hsa-miR-12120 1 0 0
chr6:30069872|30070106 hsa-miR-29b-1-5p 0 1 0
chr6:30069872|30070106 hsa-miR-6734-5p 1 0 0
chr6:30069872|30070106 hsa-miR-149-5p 1 0 0
chr6:30069872|30070106 hsa-miR-7106-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6825-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6894-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6799-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6728-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6833-5p 0 1 0
chr6:30069872|30070106 hsa-miR-5187-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6873-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6880-5p 1 0 0
chr6:30069872|30070106 hsa-miR-7847-3p 1 0 0
chr6:30069872|30070106 hsa-miR-4695-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6875-3p 1 1 0
chr6:30069872|30070106 hsa-miR-197-5p 1 0 0
chr6:30069872|30070106 hsa-miR-7845-5p 1 0 0
chr6:30069872|30070106 hsa-miR-3605-5p 1 0 0
chr6:30069872|30070106 hsa-miR-3180-3p 1 0 0
chr6:30069872|30070106 hsa-miR-6805-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6798-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6760-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6782-5p 1 0 0
chr6:30069872|30070106 hsa-miR-7109-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6740-5p 1 0 0
chr6:30069872|30070106 hsa-miR-7108-3p 1 0 0
chr6:30069872|30070106 hsa-miR-1908-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6749-5p 1 0 0
chr6:30069872|30070106 hsa-miR-3202 1 0 0
chr6:30069872|30070106 hsa-miR-6780a-3p 0 1 0
chr6:30069872|30070106 hsa-miR-149-3p 1 1 0
chr6:30069872|30070106 hsa-miR-6824-5p 1 0 0
chr6:30069872|30070106 hsa-miR-3162-5p 0 1 0
chr6:30069872|30070106 hsa-miR-5010-5p 1 0 0
chr6:30069872|30070106 hsa-miR-5088-3p 0 1 0
chr6:30069872|30070106 hsa-miR-5089-5p 1 1 0
chr6:30069872|30070106 hsa-miR-4433a-5p 1 0 0
chr6:30069872|30070106 hsa-miR-4433b-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6505-5p 0 1 0
chr6:30069872|30070106 hsa-miR-1207-5p 1 0 0
chr6:30069872|30070106 hsa-miR-1233-5p 1 0 0
chr6:30069872|30070106 hsa-miR-4763-3p 1 0 0
chr6:30069872|30070106 hsa-miR-6778-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6816-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6870-5p 1 0 0
chr6:30069872|30070106 hsa-miR-1343-5p 1 0 0
chr6:30069872|30070106 hsa-miR-3180 1 0 0
chr6:30069872|30070106 hsa-miR-6743-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6754-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6756-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6803-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6851-5p 1 0 0
chr6:30069872|30070106 hsa-miR-7107-5p 1 0 0
chr6:30069872|30070106 hsa-miR-11181-3p 1 0 0
chr6:30069872|30070106 hsa-miR-1249-5p 1 1 0
chr6:30069872|30070106 hsa-miR-6779-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6780a-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6788-5p 0 1 0
chr6:30069872|30070106 hsa-miR-6797-5p 1 1 0
chr6:30069872|30070106 hsa-miR-6808-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6875-5p 1 0 0
chr6:30069872|30070106 hsa-miR-7111-5p 1 1 0
chr6:30069872|30070106 hsa-miR-4728-5p 1 1 0
chr6:30069872|30070106 hsa-miR-5196-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6780b-5p 1 0 0
chr6:30069872|30070106 hsa-miR-1237-5p 1 0 0
chr6:30069872|30070106 hsa-miR-328-5p 1 0 0
chr6:30069872|30070106 hsa-miR-4649-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6729-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6738-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6794-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6858-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6883-5p 1 1 0
chr6:30069872|30070106 hsa-miR-4723-5p 1 1 0
chr6:30069872|30070106 hsa-miR-6831-5p 1 0 0
chr6:30069872|30070106 hsa-miR-939-5p 1 1 0
chr6:30069872|30070106 hsa-miR-30c-1-3p 1 1 0
chr6:30069872|30070106 hsa-miR-6731-5p 1 1 0
chr6:30069872|30070106 hsa-miR-4646-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6876-5p 0 1 0
chr6:30069872|30070106 hsa-miR-6891-5p 1 0 0
chr6:30069872|30070106 hsa-miR-4716-3p 1 0 0
chr6:30069872|30070106 hsa-miR-6750-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6766-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6785-5p 1 1 0
chr6:30069872|30070106 hsa-miR-9851-5p 1 0 0
chr6:30069872|30070106 hsa-miR-6764-5p 0 1 0
chr6:30069872|30070106 hsa-miR-3121-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:30069872|30070106
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MDLSLKLKNKRQRRQSALSDQSQASFVRNPK
Nucleotide Sequence TTGGATCTGTCTCTGAAGCTGAAAAACAAAAGGCAGAGGAGACAGTCGGCTCTAAGTGACCAATCTCAAGCCAGCTTTGTCAGAAATCCTAAATAA
CircID chr6:30069872|30070106
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MSEILNNRRRVGRKDMIISYSIFHKR
Nucleotide Sequence TTGTCAGAAATCCTAAATAACAGGAGAAGGGTGGGAAGAAAGGATATGATTATTTCTTATTCCATTTTCCATAAGAGGTGA
CircID chr6:30069872|30070106
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MSFSPLMENGIRNNHILSSHPSPVI
Nucleotide Sequence TTGTCATTCTCACCTCTTATGGAAAATGGAATAAGAAATAATCATATCCTTTCTTCCCACCCTTCTCCTGTTATTTAG
CircID chr6:30069872|30070106
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MSPLPFVFQLQRQIQYSPRDLGLWERKEEGGSKEIG
Nucleotide Sequence CTGTCTCCTCTGCCTTTTGTTTTTCAGCTTCAGAGACAGATCCAATATAGTCCCAGGGACCTGGGTCTCTGGGAGAGGAAGGAAGAGGGAGGGAGCAAAGAGATTGGG
CircID chr6:30069872|30070106
ORF Type ORF5
Protein Length 30
Nucleotide Length 90
Protein Sequence MFFSFRDRSNIVPGTWVSGRGRKREGAKRL
Nucleotide Sequence TTGTTTTTCAGCTTCAGAGACAGATCCAATATAGTCCCAGGGACCTGGGTCTCTGGGAGAGGAAGGAAGAGGGAGGGAGCAAAGAGATTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab