CircRNA Information

General Information
circRNA Basic Information
CircID chr6:30184987|30185263
Strand +
CircType exon
Host Gene ENSG00000234127.7;
Algorism CIRI2;
Sequence CAGGGCTGAGCATATTTCCATAGCCAAGGAGGTGGGACTCCCTGGAGCTATCTGTGGTCTTAGGGAAGGATCCAGACATACACGGCTTTGGGGTACAAGCTGTGATCACTGATCAATAAATTATCTCTAGATTGGTCCTTGTGAGGGGAGTTTTAAGAATCCAGAACATCTTGCTCTTGATCAGCACATCCAAAAACACCAAGACAAACATCCAGTGGAGCAGAACCTCTCCTGCCTCGGGAGTTCTGACCGGGTTCCCCAGCAGGGTGTTAAGCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:30184987|30185263 hsa-miR-370-5p 0 0 1
chr6:30184987|30185263 hsa-miR-370-3p 0 0 1
chr6:30184987|30185263 hsa-miR-383-5p 0 0 1
chr6:30184987|30185263 hsa-miR-383-3p 0 0 1
chr6:30184987|30185263 hsa-miR-335-5p 0 0 1
chr6:30184987|30185263 hsa-miR-335-3p 0 0 1
chr6:30184987|30185263 hsa-miR-431-5p 0 0 1
chr6:30184987|30185263 hsa-miR-431-3p 0 0 1
chr6:30184987|30185263 hsa-miR-511-5p 0 0 1
chr6:30184987|30185263 hsa-miR-511-3p 0 0 1
chr6:30184987|30185263 hsa-miR-567 0 0 1
chr6:30184987|30185263 hsa-miR-940 0 0 1
chr6:30184987|30185263 hsa-miR-297 0 0 1
chr6:30184987|30185263 hsa-miR-1231 0 0 1
chr6:30184987|30185263 hsa-miR-548e-5p 0 0 1
chr6:30184987|30185263 hsa-miR-548e-3p 0 0 1
chr6:30184987|30185263 hsa-miR-1299 0 0 1
chr6:30184987|30185263 hsa-miR-1243 0 0 1
chr6:30184987|30185263 hsa-miR-513b-5p 0 0 1
chr6:30184987|30185263 hsa-miR-513b-3p 0 0 1
chr6:30184987|30185263 hsa-miR-1827 0 0 1
chr6:30184987|30185263 hsa-miR-1289 0 0 1
chr6:30184987|30185263 hsa-miR-1224-3p 0 0 1
chr6:30184987|30185263 hsa-miR-654-3p 0 0 1
chr6:30184987|30185263 hsa-miR-767-3p 0 0 1
chr6:30184987|30185263 hsa-miR-140-3p 0 0 1
chr6:30184987|30185263 hsa-miR-518d-5p 0 0 1
chr6:30184987|30185263 hsa-miR-519b-5p 0 0 1
chr6:30184987|30185263 hsa-miR-519c-5p 0 0 1
chr6:30184987|30185263 hsa-miR-520c-5p 0 0 1
chr6:30184987|30185263 hsa-miR-548a-3p 0 0 1
chr6:30184987|30185263 hsa-miR-1260 0 0 1
chr6:30184987|30185263 hsa-miR-1280 0 0 1
chr6:30184987|30185263 hsa-miR-548f 0 0 1
chr6:30184987|30185263 hsa-miR-516b 0 0 1
chr6:30184987|30185263 hsa-miR-526a 0 0 1
chr6:30184987|30185263 hsa-miR-1826 0 0 1
chr6:30184987|30185263 hsa-miR-1245 0 0 1
chr6:30184987|30185263 hsa-miR-637 1 0 0
chr6:30184987|30185263 hsa-miR-7974 1 0 0
chr6:30184987|30185263 hsa-miR-8075 1 0 0
chr6:30184987|30185263 hsa-miR-8089 1 0 0
chr6:30184987|30185263 hsa-miR-105-3p 1 0 0
chr6:30184987|30185263 hsa-miR-3692-5p 1 0 0
chr6:30184987|30185263 hsa-miR-491-5p 1 0 0
chr6:30184987|30185263 hsa-miR-193b-5p 1 0 0
chr6:30184987|30185263 hsa-miR-4763-3p 1 0 0
chr6:30184987|30185263 hsa-miR-1343-5p 1 0 0
chr6:30184987|30185263 hsa-miR-6808-5p 1 0 0
chr6:30184987|30185263 hsa-miR-939-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:30184987|30185263
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MELSVVLGKDPDIHGFGVQAVITDQ
Nucleotide Sequence CTGGAGCTATCTGTGGTCTTAGGGAAGGATCCAGACATACACGGCTTTGGGGTACAAGCTGTGATCACTGATCAATAA
CircID chr6:30184987|30185263
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MVLVRGVLRIQNILLLISTSKNTKTNIQWSRTSPASGVLTGFPSRVLS
Nucleotide Sequence TTGGTCCTTGTGAGGGGAGTTTTAAGAATCCAGAACATCTTGCTCTTGATCAGCACATCCAAAAACACCAAGACAAACATCCAGTGGAGCAGAACCTCTCCTGCCTCGGGAGTTCTGACCGGGTTCCCCAGCAGGGTGTTAAGC
CircID chr6:30184987|30185263
ORF Type ORF3
Protein Length 50
Nucleotide Length 153
Protein Sequence MLGNPVRTPEAGEVLLHWMFVLVFLDVLIKSKMFWILKTPLTRTNLEIIY
Nucleotide Sequence CTGCTGGGGAACCCGGTCAGAACTCCCGAGGCAGGAGAGGTTCTGCTCCACTGGATGTTTGTCTTGGTGTTTTTGGATGTGCTGATCAAGAGCAAGATGTTCTGGATTCTTAAAACTCCCCTCACAAGGACCAATCTAGAGATAATTTATTGA
CircID chr6:30184987|30185263
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MSGSFPKTTDSSRESHLLGYGNMLSP
Nucleotide Sequence ATGTCTGGATCCTTCCCTAAGACCACAGATAGCTCCAGGGAGTCCCACCTCCTTGGCTATGGAAATATGCTCAGCCCT
CircID chr6:30184987|30185263
ORF Type ORF5
Protein Length 25
Nucleotide Length 75
Protein Sequence MDPSLRPQIAPGSPTSLAMEICSAL
Nucleotide Sequence CTGGATCCTTCCCTAAGACCACAGATAGCTCCAGGGAGTCCCACCTCCTTGGCTATGGAAATATGCTCAGCCCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab