CircRNA Information

General Information
circRNA Basic Information
CircID chr6:30186143|30186260
Strand +
CircType exon
Host Gene ENSG00000234127.7;
Algorism CIRI2;
Sequence GGACGAAGATGAGGAATCGTTGGGCGATGAAGAGGAAGAAGAGGAGGAGGAAGAGGAGGAAGTTCTGGAAAGCTGCATGGTGGGGGTGGCTAGAGACTCTGTGAAGAGGAAGGGAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:30186143|30186260 hsa-miR-27a-5p 0 0 1
chr6:30186143|30186260 hsa-miR-27a-3p 0 0 1
chr6:30186143|30186260 hsa-miR-27b-5p 0 0 1
chr6:30186143|30186260 hsa-miR-27b-3p 0 0 1
chr6:30186143|30186260 hsa-miR-412-5p 0 0 1
chr6:30186143|30186260 hsa-miR-412-3p 0 0 1
chr6:30186143|30186260 hsa-miR-1301-5p 0 0 1
chr6:30186143|30186260 hsa-miR-1301-3p 0 0 1
chr6:30186143|30186260 hsa-miR-1236-5p 0 0 1
chr6:30186143|30186260 hsa-miR-1236-3p 0 0 1
chr6:30186143|30186260 hsa-miR-1251-5p 0 0 1
chr6:30186143|30186260 hsa-miR-1251-3p 0 0 1
chr6:30186143|30186260 hsa-miR-525-5p 0 0 1
chr6:30186143|30186260 hsa-miR-513a-5p 0 0 1
chr6:30186143|30186260 hsa-miR-520a-5p 0 0 1
chr6:30186143|30186260 hsa-miR-1281 1 0 0
chr6:30186143|30186260 hsa-miR-3183 1 0 0
chr6:30186143|30186260 hsa-miR-4326 1 0 0
chr6:30186143|30186260 hsa-miR-4268 1 0 0
chr6:30186143|30186260 hsa-miR-4279 1 0 0
chr6:30186143|30186260 hsa-miR-4469 1 0 0
chr6:30186143|30186260 hsa-miR-5193 1 1 0
chr6:30186143|30186260 hsa-miR-6749-3p 1 0 0
chr6:30186143|30186260 hsa-miR-4700-3p 1 0 0
chr6:30186143|30186260 hsa-miR-6879-3p 1 0 0
chr6:30186143|30186260 hsa-miR-6881-3p 1 1 0
chr6:30186143|30186260 hsa-miR-6875-3p 1 0 0
chr6:30186143|30186260 hsa-miR-7110-3p 1 0 0
chr6:30186143|30186260 hsa-miR-6845-3p 1 0 0
chr6:30186143|30186260 hsa-miR-877-3p 1 1 0
chr6:30186143|30186260 hsa-miR-6882-3p 1 0 0
chr6:30186143|30186260 hsa-miR-4436b-5p 1 0 0
chr6:30186143|30186260 hsa-miR-5001-3p 1 0 0
chr6:30186143|30186260 hsa-miR-7113-3p 1 0 0
chr6:30186143|30186260 hsa-miR-3667-3p 1 1 0
chr6:30186143|30186260 hsa-miR-6809-3p 1 1 0
chr6:30186143|30186260 hsa-miR-7111-3p 1 0 0
chr6:30186143|30186260 hsa-miR-6780a-3p 1 0 0
chr6:30186143|30186260 hsa-miR-6830-3p 1 0 0
chr6:30186143|30186260 hsa-miR-211-5p 1 0 0
chr6:30186143|30186260 hsa-miR-1237-3p 1 0 0
chr6:30186143|30186260 hsa-miR-6785-3p 1 1 0
chr6:30186143|30186260 hsa-miR-6828-3p 1 0 0
chr6:30186143|30186260 hsa-miR-3180-5p 1 1 0
chr6:30186143|30186260 hsa-miR-4778-3p 1 1 0
chr6:30186143|30186260 hsa-miR-1238-3p 1 0 0
chr6:30186143|30186260 hsa-miR-6867-3p 1 1 0
chr6:30186143|30186260 hsa-miR-1224-3p 1 0 0
chr6:30186143|30186260 hsa-miR-4632-3p 1 0 0
chr6:30186143|30186260 hsa-miR-6758-3p 1 0 0
chr6:30186143|30186260 hsa-miR-6826-3p 1 0 0
chr6:30186143|30186260 hsa-miR-5088-3p 1 0 0
chr6:30186143|30186260 hsa-miR-6738-3p 1 0 0
chr6:30186143|30186260 hsa-miR-6880-3p 1 0 0
chr6:30186143|30186260 hsa-miR-3124-3p 1 0 0
chr6:30186143|30186260 hsa-miR-130b-5p 1 0 0
chr6:30186143|30186260 hsa-miR-449b-3p 1 0 0
chr6:30186143|30186260 hsa-miR-5584-3p 1 0 0
chr6:30186143|30186260 hsa-miR-1287-3p 0 1 0
chr6:30186143|30186260 hsa-miR-6734-3p 1 0 0
chr6:30186143|30186260 hsa-miR-6515-3p 1 1 0
chr6:30186143|30186260 hsa-miR-3162-3p 1 0 0
chr6:30186143|30186260 hsa-miR-320a-5p 1 1 0
chr6:30186143|30186260 hsa-miR-4685-3p 1 1 0
chr6:30186143|30186260 hsa-miR-4755-5p 1 0 0
chr6:30186143|30186260 hsa-miR-6754-3p 1 0 0
chr6:30186143|30186260 hsa-miR-2682-3p 1 1 0
chr6:30186143|30186260 hsa-miR-6756-3p 1 0 0
chr6:30186143|30186260 hsa-miR-6792-3p 1 0 0
chr6:30186143|30186260 hsa-miR-6829-3p 1 0 0
chr6:30186143|30186260 hsa-miR-3059-5p 1 1 0
chr6:30186143|30186260 hsa-miR-6891-3p 1 1 0
chr6:30186143|30186260 hsa-miR-4701-5p 1 0 0
chr6:30186143|30186260 hsa-miR-4691-5p 1 0 0
chr6:30186143|30186260 hsa-miR-6827-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:30186143|30186260
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MGDEEEEEEEEEEEVLESCMVGVARDSVKRKGD
Nucleotide Sequence TTGGGCGATGAAGAGGAAGAAGAGGAGGAGGAAGAGGAGGAAGTTCTGGAAAGCTGCATGGTGGGGGTGGCTAGAGACTCTGTGAAGAGGAAGGGAGAC
CircID chr6:30186143|30186260
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MRNRWAMKRKKRRRKRRKFWKAAWWGWLETL
Nucleotide Sequence ATGAGGAATCGTTGGGCGATGAAGAGGAAGAAGAGGAGGAGGAAGAGGAGGAAGTTCTGGAAAGCTGCATGGTGGGGGTGGCTAGAGACTCTGTGA
CircID chr6:30186143|30186260
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MQLSRTSSSSSSSSSSSSPNDSSSSS
Nucleotide Sequence ATGCAGCTTTCCAGAACTTCCTCCTCTTCCTCCTCCTCTTCTTCCTCTTCATCGCCCAACGATTCCTCATCTTCGTCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab