CircRNA Information

General Information
circRNA Basic Information
CircID chr6:30493087|30493229
Strand +
CircType exon
Host Gene ENSG00000204592.8;
Algorism CIRI2;
Sequence CTCCGCCTCCCGGGTTGACGCCATTCTCCTGCCTCCGCCTCCTGAGTAGCTGGGACTACAGGCCCGTGCCTCTGCGCCCAGCTAATTTTTTGTATTTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTTTCGAT
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:30493087|30493229 hsa-miR-510-5p 0 0 1
chr6:30493087|30493229 hsa-miR-510-3p 0 0 1
chr6:30493087|30493229 hsa-miR-564 0 1 1
chr6:30493087|30493229 hsa-miR-650 0 0 1
chr6:30493087|30493229 hsa-miR-658 1 1 1
chr6:30493087|30493229 hsa-miR-940 0 0 1
chr6:30493087|30493229 hsa-miR-1827 0 0 1
chr6:30493087|30493229 hsa-miR-512-5p 0 0 1
chr6:30493087|30493229 hsa-miR-663a 1 0 0
chr6:30493087|30493229 hsa-miR-665 1 1 0
chr6:30493087|30493229 hsa-miR-3196 1 0 0
chr6:30493087|30493229 hsa-miR-3197 1 1 0
chr6:30493087|30493229 hsa-miR-3937 1 0 0
chr6:30493087|30493229 hsa-miR-4467 1 0 0
chr6:30493087|30493229 hsa-miR-4488 1 0 0
chr6:30493087|30493229 hsa-miR-3960 1 0 0
chr6:30493087|30493229 hsa-miR-4656 1 0 0
chr6:30493087|30493229 hsa-miR-4688 1 0 0
chr6:30493087|30493229 hsa-miR-4706 1 0 0
chr6:30493087|30493229 hsa-miR-4739 1 0 0
chr6:30493087|30493229 hsa-miR-4794 0 1 0
chr6:30493087|30493229 hsa-miR-5192 1 0 0
chr6:30493087|30493229 hsa-miR-5787 1 0 0
chr6:30493087|30493229 hsa-miR-6125 1 0 0
chr6:30493087|30493229 hsa-miR-8073 1 0 0
chr6:30493087|30493229 hsa-miR-12114 1 0 0
chr6:30493087|30493229 hsa-miR-4433a-3p 1 0 0
chr6:30493087|30493229 hsa-miR-6765-5p 1 1 0
chr6:30493087|30493229 hsa-miR-7106-5p 1 0 0
chr6:30493087|30493229 hsa-miR-6894-5p 1 0 0
chr6:30493087|30493229 hsa-miR-25-5p 1 1 0
chr6:30493087|30493229 hsa-miR-3622a-5p 0 1 0
chr6:30493087|30493229 hsa-miR-6089 1 0 0
chr6:30493087|30493229 hsa-miR-6880-5p 1 0 0
chr6:30493087|30493229 hsa-miR-7847-3p 1 0 0
chr6:30493087|30493229 hsa-miR-4695-5p 1 1 0
chr6:30493087|30493229 hsa-miR-6746-5p 1 0 0
chr6:30493087|30493229 hsa-miR-4722-5p 0 1 0
chr6:30493087|30493229 hsa-miR-3189-5p 1 0 0
chr6:30493087|30493229 hsa-miR-3180-3p 1 0 0
chr6:30493087|30493229 hsa-miR-6805-5p 1 0 0
chr6:30493087|30493229 hsa-miR-6798-5p 1 0 0
chr6:30493087|30493229 hsa-miR-2467-3p 1 1 0
chr6:30493087|30493229 hsa-miR-6735-3p 0 1 0
chr6:30493087|30493229 hsa-miR-4793-5p 0 1 0
chr6:30493087|30493229 hsa-miR-1908-5p 1 0 0
chr6:30493087|30493229 hsa-miR-6771-5p 1 0 0
chr6:30493087|30493229 hsa-miR-6749-5p 0 1 0
chr6:30493087|30493229 hsa-miR-6781-5p 1 0 0
chr6:30493087|30493229 hsa-miR-4750-5p 1 0 0
chr6:30493087|30493229 hsa-miR-20b-3p 0 1 0
chr6:30493087|30493229 hsa-miR-3664-3p 0 1 0
chr6:30493087|30493229 hsa-miR-10400-5p 1 0 0
chr6:30493087|30493229 hsa-miR-1207-5p 1 0 0
chr6:30493087|30493229 hsa-miR-4763-3p 1 0 0
chr6:30493087|30493229 hsa-miR-6787-5p 1 0 0
chr6:30493087|30493229 hsa-miR-6816-5p 1 0 0
chr6:30493087|30493229 hsa-miR-6893-5p 1 1 0
chr6:30493087|30493229 hsa-miR-3180 1 0 0
chr6:30493087|30493229 hsa-miR-5001-5p 1 0 0
chr6:30493087|30493229 hsa-miR-6743-5p 1 0 0
chr6:30493087|30493229 hsa-miR-6815-5p 1 0 0
chr6:30493087|30493229 hsa-miR-6851-5p 1 0 0
chr6:30493087|30493229 hsa-miR-11181-3p 1 0 0
chr6:30493087|30493229 hsa-miR-1249-5p 1 0 0
chr6:30493087|30493229 hsa-miR-6722-3p 1 0 0
chr6:30493087|30493229 hsa-miR-6808-5p 1 1 0
chr6:30493087|30493229 hsa-miR-6879-5p 1 0 0
chr6:30493087|30493229 hsa-miR-7111-5p 1 0 0
chr6:30493087|30493229 hsa-miR-3620-5p 1 0 0
chr6:30493087|30493229 hsa-miR-4728-5p 1 0 0
chr6:30493087|30493229 hsa-miR-10396b-5p 1 0 0
chr6:30493087|30493229 hsa-miR-1237-5p 1 0 0
chr6:30493087|30493229 hsa-miR-1909-3p 1 0 0
chr6:30493087|30493229 hsa-miR-328-5p 1 0 0
chr6:30493087|30493229 hsa-miR-4745-5p 1 0 0
chr6:30493087|30493229 hsa-miR-4749-5p 1 0 0
chr6:30493087|30493229 hsa-miR-6846-5p 1 0 0
chr6:30493087|30493229 hsa-miR-6848-5p 1 0 0
chr6:30493087|30493229 hsa-miR-6858-5p 1 0 0
chr6:30493087|30493229 hsa-miR-6831-5p 1 0 0
chr6:30493087|30493229 hsa-miR-3619-5p 1 0 0
chr6:30493087|30493229 hsa-miR-6827-3p 0 1 0
chr6:30493087|30493229 hsa-miR-6771-3p 0 1 0
chr6:30493087|30493229 hsa-miR-433-5p 0 1 0
chr6:30493087|30493229 hsa-miR-4509 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:30493087|30493229
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MTPFSCLRLLSSWDYRPVPLRPANFLYFLVETGFHRVSQDGFD
Nucleotide Sequence TTGACGCCATTCTCCTGCCTCCGCCTCCTGAGTAGCTGGGACTACAGGCCCGTGCCTCTGCGCCCAGCTAATTTTTTGTATTTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTTTCGAT
CircID chr6:30493087|30493229
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MGAEARACSPSYSGGGGRRMASTREAE
Nucleotide Sequence CTGGGCGCAGAGGCACGGGCCTGTAGTCCCAGCTACTCAGGAGGCGGAGGCAGGAGAATGGCGTCAACCCGGGAGGCGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab