CircRNA Information

General Information
circRNA Basic Information
CircID chr6:30493788|30494135
Strand -
CircType exon
Host Gene ENSG00000204592.8;
Algorism CIRI2;
Sequence CAGGGAAATGTCTAGTGTCTAGTGGATCCAGGCCACAGGAGAGAGTGCCTTGTGGAGCGCTGGGAGCAGGACCTGACCACCACCAGGACCCCAGAACTGTGGAGTCAGTGGCAGCATGCAGCGCCCCCTTGGGAAAGCTTTAGGCACCAGCCTGCAACCCATTCGAGCAGCCACGTAGGCTGCACCCAGCAAAGCCACAGGCACGGGGCTACCTGAGGCCTTGGGGGCCCAATCCCTGCTCCAGTGTGTCCGTGAGGCAGCACACGAAGTCAAAAGAGATTATTCTCTTCCCACAGATACCTTTTCTCTCCCATGACCCTTTAACAGCATCTGCTTCATTCCCCTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:30493788|30494135 hsa-miR-216a-5p 0 0 1
chr6:30493788|30494135 hsa-miR-216a-3p 0 0 1
chr6:30493788|30494135 hsa-miR-185-5p 0 0 1
chr6:30493788|30494135 hsa-miR-185-3p 0 0 1
chr6:30493788|30494135 hsa-miR-320a-5p 0 0 1
chr6:30493788|30494135 hsa-miR-320a-3p 0 0 1
chr6:30493788|30494135 hsa-miR-370-5p 0 0 1
chr6:30493788|30494135 hsa-miR-370-3p 0 0 1
chr6:30493788|30494135 hsa-miR-345-5p 0 0 1
chr6:30493788|30494135 hsa-miR-345-3p 0 0 1
chr6:30493788|30494135 hsa-miR-506-5p 0 0 1
chr6:30493788|30494135 hsa-miR-506-3p 0 0 1
chr6:30493788|30494135 hsa-miR-603 0 0 1
chr6:30493788|30494135 hsa-miR-604 0 0 1
chr6:30493788|30494135 hsa-miR-617 0 0 1
chr6:30493788|30494135 hsa-miR-637 1 0 1
chr6:30493788|30494135 hsa-miR-647 0 0 1
chr6:30493788|30494135 hsa-miR-216b-5p 0 0 1
chr6:30493788|30494135 hsa-miR-216b-3p 0 0 1
chr6:30493788|30494135 hsa-miR-663b 1 0 1
chr6:30493788|30494135 hsa-miR-548m 1 1 1
chr6:30493788|30494135 hsa-miR-296-5p 1 0 1
chr6:30493788|30494135 hsa-miR-615-5p 1 1 1
chr6:30493788|30494135 hsa-miR-423-5p 0 0 1
chr6:30493788|30494135 hsa-miR-876-3p 0 0 1
chr6:30493788|30494135 hsa-miR-320b 0 0 1
chr6:30493788|30494135 hsa-miR-320c 0 0 1
chr6:30493788|30494135 hsa-miR-320d 0 0 1
chr6:30493788|30494135 hsa-miR-1274a 0 0 1
chr6:30493788|30494135 hsa-miR-323-5p 0 0 1
chr6:30493788|30494135 hsa-miR-550 0 0 1
chr6:30493788|30494135 hsa-miR-1308 0 0 1
chr6:30493788|30494135 hsa-miR-138 0 0 1
chr6:30493788|30494135 hsa-miR-124 0 0 1
chr6:30493788|30494135 hsa-miR-1254 0 0 1
chr6:30493788|30494135 hsa-miR-596 0 1 0
chr6:30493788|30494135 hsa-miR-762 1 0 0
chr6:30493788|30494135 hsa-miR-940 1 0 0
chr6:30493788|30494135 hsa-miR-1182 1 0 0
chr6:30493788|30494135 hsa-miR-1204 1 0 0
chr6:30493788|30494135 hsa-miR-1275 1 0 0
chr6:30493788|30494135 hsa-miR-4298 1 0 0
chr6:30493788|30494135 hsa-miR-4306 0 1 0
chr6:30493788|30494135 hsa-miR-4252 0 1 0
chr6:30493788|30494135 hsa-miR-4271 1 0 0
chr6:30493788|30494135 hsa-miR-3943 1 1 0
chr6:30493788|30494135 hsa-miR-4457 0 1 0
chr6:30493788|30494135 hsa-miR-4507 1 1 0
chr6:30493788|30494135 hsa-miR-4525 1 0 0
chr6:30493788|30494135 hsa-miR-4644 0 1 0
chr6:30493788|30494135 hsa-miR-4706 1 0 0
chr6:30493788|30494135 hsa-miR-4734 1 0 0
chr6:30493788|30494135 hsa-miR-5698 1 0 0
chr6:30493788|30494135 hsa-miR-5739 1 0 0
chr6:30493788|30494135 hsa-miR-6081 1 1 0
chr6:30493788|30494135 hsa-miR-6090 1 0 0
chr6:30493788|30494135 hsa-miR-8060 1 0 0
chr6:30493788|30494135 hsa-miR-8085 1 1 0
chr6:30493788|30494135 hsa-miR-138-5p 0 1 0
chr6:30493788|30494135 hsa-miR-135a-3p 1 0 0
chr6:30493788|30494135 hsa-miR-6734-5p 1 1 0
chr6:30493788|30494135 hsa-miR-7155-5p 0 1 0
chr6:30493788|30494135 hsa-miR-323a-5p 0 1 0
chr6:30493788|30494135 hsa-miR-4687-3p 1 1 0
chr6:30493788|30494135 hsa-miR-6833-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6746-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6820-5p 1 0 0
chr6:30493788|30494135 hsa-miR-4474-3p 0 1 0
chr6:30493788|30494135 hsa-miR-3622b-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6806-5p 1 0 0
chr6:30493788|30494135 hsa-miR-181a-2-3p 0 1 0
chr6:30493788|30494135 hsa-miR-5589-5p 0 1 0
chr6:30493788|30494135 hsa-miR-6776-5p 0 1 0
chr6:30493788|30494135 hsa-miR-6871-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6772-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6793-5p 1 1 0
chr6:30493788|30494135 hsa-miR-6805-5p 0 1 0
chr6:30493788|30494135 hsa-miR-6798-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6821-5p 1 1 0
chr6:30493788|30494135 hsa-miR-1343-3p 1 0 0
chr6:30493788|30494135 hsa-miR-1226-5p 1 0 0
chr6:30493788|30494135 hsa-miR-1228-5p 1 0 0
chr6:30493788|30494135 hsa-miR-149-3p 1 0 0
chr6:30493788|30494135 hsa-miR-6824-5p 1 0 0
chr6:30493788|30494135 hsa-miR-7156-3p 1 1 0
chr6:30493788|30494135 hsa-miR-5010-5p 1 0 0
chr6:30493788|30494135 hsa-miR-7112-5p 1 0 0
chr6:30493788|30494135 hsa-miR-3922-5p 0 1 0
chr6:30493788|30494135 hsa-miR-660-3p 0 1 0
chr6:30493788|30494135 hsa-miR-4661-3p 1 1 0
chr6:30493788|30494135 hsa-miR-1251-3p 0 1 0
chr6:30493788|30494135 hsa-miR-6814-5p 1 1 0
chr6:30493788|30494135 hsa-miR-4639-3p 0 1 0
chr6:30493788|30494135 hsa-miR-4704-5p 0 1 0
chr6:30493788|30494135 hsa-miR-4727-5p 0 1 0
chr6:30493788|30494135 hsa-miR-744-3p 0 1 0
chr6:30493788|30494135 hsa-miR-1207-5p 1 0 0
chr6:30493788|30494135 hsa-miR-4763-3p 1 0 0
chr6:30493788|30494135 hsa-miR-6870-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6743-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6803-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6722-3p 1 0 0
chr6:30493788|30494135 hsa-miR-6751-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6779-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6780a-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6788-5p 1 1 0
chr6:30493788|30494135 hsa-miR-6797-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6808-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6879-5p 1 0 0
chr6:30493788|30494135 hsa-miR-7111-5p 1 0 0
chr6:30493788|30494135 hsa-miR-4728-5p 1 1 0
chr6:30493788|30494135 hsa-miR-642b-3p 0 1 0
chr6:30493788|30494135 hsa-miR-1909-3p 1 0 0
chr6:30493788|30494135 hsa-miR-328-5p 1 0 0
chr6:30493788|30494135 hsa-miR-3689a-3p 1 0 0
chr6:30493788|30494135 hsa-miR-4745-5p 1 0 0
chr6:30493788|30494135 hsa-miR-4749-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6777-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6795-5p 1 1 0
chr6:30493788|30494135 hsa-miR-6883-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6887-5p 1 0 0
chr6:30493788|30494135 hsa-miR-4697-5p 1 1 0
chr6:30493788|30494135 hsa-miR-939-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6511b-5p 0 1 0
chr6:30493788|30494135 hsa-miR-3940-5p 0 1 0
chr6:30493788|30494135 hsa-miR-30c-1-3p 0 1 0
chr6:30493788|30494135 hsa-miR-6731-5p 1 1 0
chr6:30493788|30494135 hsa-miR-6856-5p 1 0 0
chr6:30493788|30494135 hsa-miR-6773-5p 0 1 0
chr6:30493788|30494135 hsa-miR-6736-5p 1 0 0
chr6:30493788|30494135 hsa-miR-3116 0 1 0
chr6:30493788|30494135 hsa-miR-6724-5p 1 1 0
chr6:30493788|30494135 hsa-miR-6762-5p 1 0 0
chr6:30493788|30494135 hsa-miR-642a-3p 0 1 0
chr6:30493788|30494135 hsa-miR-6811-5p 0 1 0
chr6:30493788|30494135 hsa-miR-6874-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:30493788|30494135
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence MTTTRTPELWSQWQHAAPPWESFRHQPATHSSSHVGCTQQSHRHGAT
Nucleotide Sequence CTGACCACCACCAGGACCCCAGAACTGTGGAGTCAGTGGCAGCATGCAGCGCCCCCTTGGGAAAGCTTTAGGCACCAGCCTGCAACCCATTCGAGCAGCCACGTAGGCTGCACCCAGCAAAGCCACAGGCACGGGGCTACCTGA
CircID chr6:30493788|30494135
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MGAQSLLQCVREAAHEVKRDYSLPTDTFSLP
Nucleotide Sequence TTGGGGGCCCAATCCCTGCTCCAGTGTGTCCGTGAGGCAGCACACGAAGTCAAAAGAGATTATTCTCTTCCCACAGATACCTTTTCTCTCCCATGA
CircID chr6:30493788|30494135
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MGAGPDHHQDPRTVESVAACSAPLGKL
Nucleotide Sequence CTGGGAGCAGGACCTGACCACCACCAGGACCCCAGAACTGTGGAGTCAGTGGCAGCATGCAGCGCCCCCTTGGGAAAGCTTTAG
CircID chr6:30493788|30494135
ORF Type ORF4
Protein Length 56
Nucleotide Length 168
Protein Sequence MHPAKPQARGYLRPWGPNPCSSVSVRQHTKSKEIILFPQIPFLSHDPLTASASFPS
Nucleotide Sequence CTGCACCCAGCAAAGCCACAGGCACGGGGCTACCTGAGGCCTTGGGGGCCCAATCCCTGCTCCAGTGTGTCCGTGAGGCAGCACACGAAGTCAAAAGAGATTATTCTCTTCCCACAGATACCTTTTCTCTCCCATGACCCTTTAACAGCATCTGCTTCATTCCCCTCA
CircID chr6:30493788|30494135
ORF Type ORF5
Protein Length 84
Nucleotide Length 255
Protein Sequence MTSCAASRTHWSRDWAPKASGSPVPVALLGAAYVAARMGCRLVPKAFPRGRCMLPLTPQFWGPGGGQVLLPALHKALSPVAWIH
Nucleotide Sequence TTGACTTCGTGTGCTGCCTCACGGACACACTGGAGCAGGGATTGGGCCCCCAAGGCCTCAGGTAGCCCCGTGCCTGTGGCTTTGCTGGGTGCAGCCTACGTGGCTGCTCGAATGGGTTGCAGGCTGGTGCCTAAAGCTTTCCCAAGGGGGCGCTGCATGCTGCCACTGACTCCACAGTTCTGGGGTCCTGGTGGTGGTCAGGTCCTGCTCCCAGCGCTCCACAAGGCACTCTCTCCTGTGGCCTGGATCCACTAG
CircID chr6:30493788|30494135
ORF Type ORF6
Protein Length 51
Nucleotide Length 156
Protein Sequence MPHGHTGAGIGPPRPQVAPCLWLCWVQPTWLLEWVAGWCLKLSQGGAACCH
Nucleotide Sequence CTGCCTCACGGACACACTGGAGCAGGGATTGGGCCCCCAAGGCCTCAGGTAGCCCCGTGCCTGTGGCTTTGCTGGGTGCAGCCTACGTGGCTGCTCGAATGGGTTGCAGGCTGGTGCCTAAAGCTTTCCCAAGGGGGCGCTGCATGCTGCCACTGA
CircID chr6:30493788|30494135
ORF Type ORF7
Protein Length 40
Nucleotide Length 120
Protein Sequence MHAATDSTVLGSWWWSGPAPSAPQGTLSCGLDPLDTRHFP
Nucleotide Sequence CTGCATGCTGCCACTGACTCCACAGTTCTGGGGTCCTGGTGGTGGTCAGGTCCTGCTCCCAGCGCTCCACAAGGCACTCTCTCCTGTGGCCTGGATCCACTAGACACTAGACATTTCCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab