CircRNA Information

General Information
circRNA Basic Information
CircID chr6:30552933|30553160
Strand -
CircType exon
Host Gene ENSG00000204590.11;
Algorism CIRI2;
Sequence CAAGTCAGTCTGCTCCTTATTCTGTCCCTTCCCCTGGCCTCTTGCACATATCCACCATAGAGGGGTTGGCTTCAGGAAAGGTGAGCAAAATGATTCTGCATCTTTGGTCTCCCCCATGTCCTCCTACAGCCCTCCTCTAAGGGCCACATACCTTTCCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:30552933|30553160 hsa-miR-19a-5p 0 0 1
chr6:30552933|30553160 hsa-miR-19a-3p 0 0 1
chr6:30552933|30553160 hsa-miR-328-5p 0 0 1
chr6:30552933|30553160 hsa-miR-328-3p 0 0 1
chr6:30552933|30553160 hsa-miR-625-5p 0 0 1
chr6:30552933|30553160 hsa-miR-625-3p 0 0 1
chr6:30552933|30553160 hsa-miR-298 0 0 1
chr6:30552933|30553160 hsa-miR-190b-5p 0 0 1
chr6:30552933|30553160 hsa-miR-190b-3p 0 0 1
chr6:30552933|30553160 hsa-miR-877-5p 0 0 1
chr6:30552933|30553160 hsa-miR-877-3p 0 0 1
chr6:30552933|30553160 hsa-miR-938 0 0 1
chr6:30552933|30553160 hsa-miR-1178-5p 0 0 1
chr6:30552933|30553160 hsa-miR-1178-3p 0 0 1
chr6:30552933|30553160 hsa-miR-1200 0 0 1
chr6:30552933|30553160 hsa-miR-663b 0 0 1
chr6:30552933|30553160 hsa-miR-1208 0 0 1
chr6:30552933|30553160 hsa-miR-1291 0 1 1
chr6:30552933|30553160 hsa-miR-548m 0 1 1
chr6:30552933|30553160 hsa-miR-1275 1 1 1
chr6:30552933|30553160 hsa-miR-491-5p 0 0 1
chr6:30552933|30553160 hsa-miR-299-3p 0 0 1
chr6:30552933|30553160 hsa-miR-455-5p 0 0 1
chr6:30552933|30553160 hsa-miR-628-5p 0 0 1
chr6:30552933|30553160 hsa-miR-19b 0 0 1
chr6:30552933|30553160 hsa-miR-190 0 0 1
chr6:30552933|30553160 hsa-miR-658 1 0 0
chr6:30552933|30553160 hsa-miR-762 1 0 0
chr6:30552933|30553160 hsa-miR-765 1 0 0
chr6:30552933|30553160 hsa-miR-2278 0 1 0
chr6:30552933|30553160 hsa-miR-3125 1 0 0
chr6:30552933|30553160 hsa-miR-3175 0 1 0
chr6:30552933|30553160 hsa-miR-3181 1 1 0
chr6:30552933|30553160 hsa-miR-4298 1 1 0
chr6:30552933|30553160 hsa-miR-4318 0 1 0
chr6:30552933|30553160 hsa-miR-4254 0 1 0
chr6:30552933|30553160 hsa-miR-4440 1 0 0
chr6:30552933|30553160 hsa-miR-4651 1 0 0
chr6:30552933|30553160 hsa-miR-4656 1 0 0
chr6:30552933|30553160 hsa-miR-4683 1 0 0
chr6:30552933|30553160 hsa-miR-4706 1 0 0
chr6:30552933|30553160 hsa-miR-4721 0 1 0
chr6:30552933|30553160 hsa-miR-4739 1 0 0
chr6:30552933|30553160 hsa-miR-4741 1 1 0
chr6:30552933|30553160 hsa-miR-4784 1 0 0
chr6:30552933|30553160 hsa-miR-5090 1 0 0
chr6:30552933|30553160 hsa-miR-5698 1 1 0
chr6:30552933|30553160 hsa-miR-6085 1 0 0
chr6:30552933|30553160 hsa-miR-6133 1 0 0
chr6:30552933|30553160 hsa-miR-6165 1 0 0
chr6:30552933|30553160 hsa-miR-8052 1 0 0
chr6:30552933|30553160 hsa-miR-8085 1 1 0
chr6:30552933|30553160 hsa-miR-8089 0 1 0
chr6:30552933|30553160 hsa-miR-12118 1 0 0
chr6:30552933|30553160 hsa-miR-211-3p 0 1 0
chr6:30552933|30553160 hsa-miR-128-1-5p 1 1 0
chr6:30552933|30553160 hsa-miR-3150a-3p 1 0 0
chr6:30552933|30553160 hsa-miR-7106-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6825-5p 1 1 0
chr6:30552933|30553160 hsa-miR-6894-5p 1 0 0
chr6:30552933|30553160 hsa-miR-4687-3p 1 0 0
chr6:30552933|30553160 hsa-miR-1227-5p 1 1 0
chr6:30552933|30553160 hsa-miR-4786-5p 0 1 0
chr6:30552933|30553160 hsa-miR-6089 1 1 0
chr6:30552933|30553160 hsa-miR-6880-5p 1 0 0
chr6:30552933|30553160 hsa-miR-7847-3p 1 0 0
chr6:30552933|30553160 hsa-miR-4695-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6744-5p 1 0 0
chr6:30552933|30553160 hsa-miR-4722-5p 1 1 0
chr6:30552933|30553160 hsa-miR-7154-3p 1 1 0
chr6:30552933|30553160 hsa-miR-197-5p 1 0 0
chr6:30552933|30553160 hsa-miR-7845-5p 0 1 0
chr6:30552933|30553160 hsa-miR-7108-5p 0 1 0
chr6:30552933|30553160 hsa-miR-3605-5p 0 1 0
chr6:30552933|30553160 hsa-miR-6716-5p 1 0 0
chr6:30552933|30553160 hsa-miR-3180-3p 1 0 0
chr6:30552933|30553160 hsa-miR-6796-5p 0 1 0
chr6:30552933|30553160 hsa-miR-3190-3p 1 0 0
chr6:30552933|30553160 hsa-miR-6827-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6798-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6782-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6810-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6852-5p 0 1 0
chr6:30552933|30553160 hsa-miR-7109-5p 1 0 0
chr6:30552933|30553160 hsa-miR-1226-5p 1 1 0
chr6:30552933|30553160 hsa-miR-4786-3p 1 1 0
chr6:30552933|30553160 hsa-miR-4640-5p 1 1 0
chr6:30552933|30553160 hsa-miR-92b-5p 0 1 0
chr6:30552933|30553160 hsa-miR-4732-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6749-5p 1 1 0
chr6:30552933|30553160 hsa-miR-3202 0 1 0
chr6:30552933|30553160 hsa-miR-4446-3p 1 1 0
chr6:30552933|30553160 hsa-miR-149-3p 1 0 0
chr6:30552933|30553160 hsa-miR-3616-3p 1 0 0
chr6:30552933|30553160 hsa-miR-6824-5p 1 0 0
chr6:30552933|30553160 hsa-miR-7156-3p 1 0 0
chr6:30552933|30553160 hsa-miR-7843-3p 0 1 0
chr6:30552933|30553160 hsa-miR-5010-5p 1 0 0
chr6:30552933|30553160 hsa-miR-7160-3p 1 0 0
chr6:30552933|30553160 hsa-miR-6501-3p 0 1 0
chr6:30552933|30553160 hsa-miR-4649-3p 0 1 0
chr6:30552933|30553160 hsa-miR-5004-5p 0 1 0
chr6:30552933|30553160 hsa-miR-3144-5p 1 1 0
chr6:30552933|30553160 hsa-miR-1233-5p 1 0 0
chr6:30552933|30553160 hsa-miR-1273h-5p 1 0 0
chr6:30552933|30553160 hsa-miR-4763-3p 1 0 0
chr6:30552933|30553160 hsa-miR-6769b-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6778-5p 1 1 0
chr6:30552933|30553160 hsa-miR-6816-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6870-5p 1 1 0
chr6:30552933|30553160 hsa-miR-1343-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6737-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6752-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6756-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6769a-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6803-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6819-5p 1 0 0
chr6:30552933|30553160 hsa-miR-10401-5p 1 0 0
chr6:30552933|30553160 hsa-miR-11181-3p 1 0 0
chr6:30552933|30553160 hsa-miR-1249-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6751-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6763-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6779-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6780a-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6797-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6879-5p 1 0 0
chr6:30552933|30553160 hsa-miR-7111-5p 1 1 0
chr6:30552933|30553160 hsa-miR-4728-5p 1 0 0
chr6:30552933|30553160 hsa-miR-5196-5p 1 1 0
chr6:30552933|30553160 hsa-miR-6780b-5p 1 1 0
chr6:30552933|30553160 hsa-miR-6862-5p 1 0 0
chr6:30552933|30553160 hsa-miR-10526-3p 1 0 0
chr6:30552933|30553160 hsa-miR-4649-5p 1 0 0
chr6:30552933|30553160 hsa-miR-4685-5p 1 0 0
chr6:30552933|30553160 hsa-miR-4725-3p 0 1 0
chr6:30552933|30553160 hsa-miR-4726-5p 1 1 0
chr6:30552933|30553160 hsa-miR-4745-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6729-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6794-5p 1 1 0
chr6:30552933|30553160 hsa-miR-6795-5p 1 1 0
chr6:30552933|30553160 hsa-miR-6846-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6848-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6858-5p 1 1 0
chr6:30552933|30553160 hsa-miR-6883-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6887-5p 1 1 0
chr6:30552933|30553160 hsa-miR-4723-5p 1 1 0
chr6:30552933|30553160 hsa-miR-6845-5p 1 1 0
chr6:30552933|30553160 hsa-miR-6885-5p 1 0 0
chr6:30552933|30553160 hsa-miR-939-5p 1 0 0
chr6:30552933|30553160 hsa-miR-3085-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6731-5p 1 1 0
chr6:30552933|30553160 hsa-miR-3173-3p 1 0 0
chr6:30552933|30553160 hsa-miR-3679-5p 1 0 0
chr6:30552933|30553160 hsa-miR-4747-5p 0 1 0
chr6:30552933|30553160 hsa-miR-6891-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6785-5p 1 1 0
chr6:30552933|30553160 hsa-miR-6791-5p 1 1 0
chr6:30552933|30553160 hsa-miR-6762-5p 1 1 0
chr6:30552933|30553160 hsa-miR-6529-5p 1 0 0
chr6:30552933|30553160 hsa-miR-4756-5p 1 0 0
chr6:30552933|30553160 hsa-miR-6859-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:30552933|30553160
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MHISTIEGLASGKVSKMILHLWSPPCPPTALL
Nucleotide Sequence TTGCACATATCCACCATAGAGGGGTTGGCTTCAGGAAAGGTGAGCAAAATGATTCTGCATCTTTGGTCTCCCCCATGTCCTCCTACAGCCCTCCTCTAA
CircID chr6:30552933|30553160
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MGETKDAESFCSPFLKPTPLWWICARGQGKGQNKEQTDL
Nucleotide Sequence ATGGGGGAGACCAAAGATGCAGAATCATTTTGCTCACCTTTCCTGAAGCCAACCCCTCTATGGTGGATATGTGCAAGAGGCCAGGGGAAGGGACAGAATAAGGAGCAGACTGACTTG
CircID chr6:30552933|30553160
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence MGPEQLLRACEAITVGKGMWPLEEGCRRTWGRPKMQNHFAHLS
Nucleotide Sequence CTGGGGCCAGAGCAGTTGCTGAGAGCCTGTGAAGCCATCACTGTGGGGAAAGGTATGTGGCCCTTAGAGGAGGGCTGTAGGAGGACATGGGGGAGACCAAAGATGCAGAATCATTTTGCTCACCTTTCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab