CircRNA Information

General Information
circRNA Basic Information
CircID chr6:30584674|30584855
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCTCCCTCCTTACTATCTGTGTTGTGAGAACTTAGGGTCTTTCTCTATTTATCTCCCTACTTGGTGGTGAGTTCTCATCAACATACCCTGCAGCTGGGTGCAATGGGTCACGCCTGTAATCCCAGCACTTTGGAAGGCAGAGGCAGGAGGATTATCTTCAACCCAGGAGTTTGAGACCAGC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:30584674|30584855 hsa-miR-17-5p 0 0 1
chr6:30584674|30584855 hsa-miR-17-3p 0 0 1
chr6:30584674|30584855 hsa-miR-20a-5p 0 0 1
chr6:30584674|30584855 hsa-miR-20a-3p 0 0 1
chr6:30584674|30584855 hsa-miR-25-5p 0 0 1
chr6:30584674|30584855 hsa-miR-25-3p 0 0 1
chr6:30584674|30584855 hsa-miR-32-5p 0 0 1
chr6:30584674|30584855 hsa-miR-32-3p 0 0 1
chr6:30584674|30584855 hsa-miR-93-5p 0 0 1
chr6:30584674|30584855 hsa-miR-93-3p 0 0 1
chr6:30584674|30584855 hsa-miR-106a-5p 0 0 1
chr6:30584674|30584855 hsa-miR-106a-3p 0 0 1
chr6:30584674|30584855 hsa-miR-197-5p 0 0 1
chr6:30584674|30584855 hsa-miR-197-3p 0 0 1
chr6:30584674|30584855 hsa-miR-146a-5p 0 0 1
chr6:30584674|30584855 hsa-miR-146a-3p 0 0 1
chr6:30584674|30584855 hsa-miR-106b-5p 0 0 1
chr6:30584674|30584855 hsa-miR-106b-3p 0 0 1
chr6:30584674|30584855 hsa-miR-302a-5p 0 0 1
chr6:30584674|30584855 hsa-miR-302a-3p 0 0 1
chr6:30584674|30584855 hsa-miR-363-5p 0 0 1
chr6:30584674|30584855 hsa-miR-363-3p 0 0 1
chr6:30584674|30584855 hsa-miR-302b-5p 0 0 1
chr6:30584674|30584855 hsa-miR-302b-3p 0 0 1
chr6:30584674|30584855 hsa-miR-302c-5p 0 0 1
chr6:30584674|30584855 hsa-miR-302c-3p 0 0 1
chr6:30584674|30584855 hsa-miR-302d-5p 0 0 1
chr6:30584674|30584855 hsa-miR-302d-3p 0 0 1
chr6:30584674|30584855 hsa-miR-367-5p 0 0 1
chr6:30584674|30584855 hsa-miR-367-3p 0 0 1
chr6:30584674|30584855 hsa-miR-372-5p 0 0 1
chr6:30584674|30584855 hsa-miR-372-3p 0 0 1
chr6:30584674|30584855 hsa-miR-373-5p 0 0 1
chr6:30584674|30584855 hsa-miR-373-3p 0 0 1
chr6:30584674|30584855 hsa-miR-20b-5p 0 0 1
chr6:30584674|30584855 hsa-miR-20b-3p 0 0 1
chr6:30584674|30584855 hsa-miR-520e-5p 0 0 1
chr6:30584674|30584855 hsa-miR-520e-3p 0 0 1
chr6:30584674|30584855 hsa-miR-520b-5p 0 0 1
chr6:30584674|30584855 hsa-miR-520b-3p 0 0 1
chr6:30584674|30584855 hsa-miR-519d-5p 0 0 1
chr6:30584674|30584855 hsa-miR-519d-3p 0 0 1
chr6:30584674|30584855 hsa-miR-520g-5p 0 0 1
chr6:30584674|30584855 hsa-miR-520g-3p 0 0 1
chr6:30584674|30584855 hsa-miR-520h 0 0 1
chr6:30584674|30584855 hsa-miR-92b-5p 0 0 1
chr6:30584674|30584855 hsa-miR-92b-3p 0 0 1
chr6:30584674|30584855 hsa-miR-567 0 0 1
chr6:30584674|30584855 hsa-miR-577 0 0 1
chr6:30584674|30584855 hsa-miR-589-5p 0 0 1
chr6:30584674|30584855 hsa-miR-589-3p 0 0 1
chr6:30584674|30584855 hsa-miR-660-5p 0 0 1
chr6:30584674|30584855 hsa-miR-660-3p 0 0 1
chr6:30584674|30584855 hsa-miR-1229-5p 0 0 1
chr6:30584674|30584855 hsa-miR-1229-3p 0 0 1
chr6:30584674|30584855 hsa-miR-1205 0 1 1
chr6:30584674|30584855 hsa-miR-302e 0 0 1
chr6:30584674|30584855 hsa-miR-1321 0 0 1
chr6:30584674|30584855 hsa-miR-512-3p 0 0 1
chr6:30584674|30584855 hsa-miR-520d-3p 0 0 1
chr6:30584674|30584855 hsa-miR-146b-5p 0 1 1
chr6:30584674|30584855 hsa-miR-342-3p 0 0 1
chr6:30584674|30584855 hsa-miR-520a-3p 0 0 1
chr6:30584674|30584855 hsa-miR-520c-3p 0 0 1
chr6:30584674|30584855 hsa-miR-220b 0 0 1
chr6:30584674|30584855 hsa-miR-371-5p 0 0 1
chr6:30584674|30584855 hsa-miR-500 0 0 1
chr6:30584674|30584855 hsa-miR-92a 0 0 1
chr6:30584674|30584855 hsa-miR-620 0 1 0
chr6:30584674|30584855 hsa-miR-638 1 0 0
chr6:30584674|30584855 hsa-miR-661 1 0 0
chr6:30584674|30584855 hsa-miR-1976 0 1 0
chr6:30584674|30584855 hsa-miR-3159 0 1 0
chr6:30584674|30584855 hsa-miR-4425 0 1 0
chr6:30584674|30584855 hsa-miR-4739 1 0 0
chr6:30584674|30584855 hsa-miR-500b-3p 0 1 0
chr6:30584674|30584855 hsa-miR-6875-3p 1 0 0
chr6:30584674|30584855 hsa-miR-6760-5p 0 1 0
chr6:30584674|30584855 hsa-miR-6716-3p 1 0 0
chr6:30584674|30584855 hsa-miR-939-3p 1 0 0
chr6:30584674|30584855 hsa-miR-3162-5p 0 1 0
chr6:30584674|30584855 hsa-miR-6742-3p 0 1 0
chr6:30584674|30584855 hsa-miR-3121-3p 0 1 0
chr6:30584674|30584855 hsa-miR-6891-5p 0 1 0
chr6:30584674|30584855 hsa-miR-5581-5p 0 1 0
chr6:30584674|30584855 hsa-miR-6783-3p 1 0 0
chr6:30584674|30584855 hsa-miR-10394-5p 0 1 0
chr6:30584674|30584855 hsa-miR-619-5p 1 1 0
chr6:30584674|30584855 hsa-miR-6843-3p 1 1 0
chr6:30584674|30584855 hsa-miR-7153-5p 0 1 0
chr6:30584674|30584855 hsa-miR-371a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:30584674|30584855
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MVVSSHQHTLQLGAMGHACNPSTLEGRGRRIIFNPGV
Nucleotide Sequence TTGGTGGTGAGTTCTCATCAACATACCCTGCAGCTGGGTGCAATGGGTCACGCCTGTAATCCCAGCACTTTGGAAGGCAGAGGCAGGAGGATTATCTTCAACCCAGGAGTTTGA
CircID chr6:30584674|30584855
ORF Type ORF2
Protein Length 43
Nucleotide Length 132
Protein Sequence LVSNSWVEDNPPASAFQSAGITGVTHCTQLQGMLMRTHHQVGR
Nucleotide Sequence CTGGTCTCAAACTCCTGGGTTGAAGATAATCCTCCTGCCTCTGCCTTCCAAAGTGCTGGGATTACAGGCGTGACCCATTGCACCCAGCTGCAGGGTATGTTGATGAGAACTCACCACCAAGTAGGGAGATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab