CircRNA Information

General Information
circRNA Basic Information
CircID chr6:30641728|30641942
Strand -
CircType exon
Host Gene ENSG00000137343.16;
Algorism CIRI2;
Sequence CTCCCCTGACCTCTCCAGAGCAATTCCTGATTAACCAAGGGCTTTGTCCATCTCATCCAGAGGAACCCAGGGTCCTCGTTGGCCCGGCTGGGACCATTCCACTGCCCCAGAATACCAGGGGGCCATGACAGCACCCACTGACAGTAAGAGCTCACTTCCCTTGGCTGCCCTTCTCCTGCATCTCCCAGGCCCCCAGAGTCTCCCCTTCGATCTTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:30641728|30641942 hsa-miR-34a-5p 0 0 1
chr6:30641728|30641942 hsa-miR-34a-3p 0 0 1
chr6:30641728|30641942 hsa-miR-223-5p 0 0 1
chr6:30641728|30641942 hsa-miR-223-3p 0 0 1
chr6:30641728|30641942 hsa-miR-143-5p 0 0 1
chr6:30641728|30641942 hsa-miR-143-3p 0 0 1
chr6:30641728|30641942 hsa-miR-185-5p 0 0 1
chr6:30641728|30641942 hsa-miR-185-3p 0 0 1
chr6:30641728|30641942 hsa-miR-206 0 0 1
chr6:30641728|30641942 hsa-miR-326 0 0 1
chr6:30641728|30641942 hsa-miR-449a 0 1 1
chr6:30641728|30641942 hsa-miR-504-5p 0 0 1
chr6:30641728|30641942 hsa-miR-504-3p 0 0 1
chr6:30641728|30641942 hsa-miR-611 1 1 1
chr6:30641728|30641942 hsa-miR-613 0 0 1
chr6:30641728|30641942 hsa-miR-626 0 0 1
chr6:30641728|30641942 hsa-miR-630 0 1 1
chr6:30641728|30641942 hsa-miR-637 1 1 1
chr6:30641728|30641942 hsa-miR-661 0 1 1
chr6:30641728|30641942 hsa-miR-449b-5p 0 0 1
chr6:30641728|30641942 hsa-miR-449b-3p 0 0 1
chr6:30641728|30641942 hsa-miR-873-5p 0 0 1
chr6:30641728|30641942 hsa-miR-873-3p 0 0 1
chr6:30641728|30641942 hsa-miR-1286 1 0 1
chr6:30641728|30641942 hsa-miR-1255a 0 0 1
chr6:30641728|30641942 hsa-miR-302f 0 0 1
chr6:30641728|30641942 hsa-miR-486-3p 0 0 1
chr6:30641728|30641942 hsa-miR-331-3p 0 0 1
chr6:30641728|30641942 hsa-miR-330-5p 0 0 1
chr6:30641728|30641942 hsa-miR-34c-5p 0 0 1
chr6:30641728|30641942 hsa-miR-1255b 0 0 1
chr6:30641728|30641942 hsa-miR-1 0 0 1
chr6:30641728|30641942 hsa-miR-516b 0 0 1
chr6:30641728|30641942 hsa-miR-129-3p 0 0 1
chr6:30641728|30641942 hsa-miR-658 1 0 0
chr6:30641728|30641942 hsa-miR-762 1 0 0
chr6:30641728|30641942 hsa-miR-765 1 0 0
chr6:30641728|30641942 hsa-miR-760 1 0 0
chr6:30641728|30641942 hsa-miR-920 1 0 0
chr6:30641728|30641942 hsa-miR-1269a 1 0 0
chr6:30641728|30641942 hsa-miR-2861 1 0 0
chr6:30641728|30641942 hsa-miR-3131 1 0 0
chr6:30641728|30641942 hsa-miR-3141 1 0 0
chr6:30641728|30641942 hsa-miR-3154 1 1 0
chr6:30641728|30641942 hsa-miR-3196 1 0 0
chr6:30641728|30641942 hsa-miR-3197 1 0 0
chr6:30641728|30641942 hsa-miR-4313 0 1 0
chr6:30641728|30641942 hsa-miR-4322 1 0 0
chr6:30641728|30641942 hsa-miR-4260 1 0 0
chr6:30641728|30641942 hsa-miR-4270 1 0 0
chr6:30641728|30641942 hsa-miR-3665 1 0 0
chr6:30641728|30641942 hsa-miR-4489 1 0 0
chr6:30641728|30641942 hsa-miR-4516 1 1 0
chr6:30641728|30641942 hsa-miR-1269b 1 0 0
chr6:30641728|30641942 hsa-miR-4525 1 0 0
chr6:30641728|30641942 hsa-miR-4534 1 0 0
chr6:30641728|30641942 hsa-miR-4688 1 0 0
chr6:30641728|30641942 hsa-miR-4734 1 0 0
chr6:30641728|30641942 hsa-miR-4739 1 0 0
chr6:30641728|30641942 hsa-miR-4741 1 0 0
chr6:30641728|30641942 hsa-miR-4751 0 1 0
chr6:30641728|30641942 hsa-miR-5090 1 0 0
chr6:30641728|30641942 hsa-miR-5192 1 0 0
chr6:30641728|30641942 hsa-miR-5703 1 0 0
chr6:30641728|30641942 hsa-miR-5706 0 1 0
chr6:30641728|30641942 hsa-miR-6088 1 0 0
chr6:30641728|30641942 hsa-miR-6124 1 0 0
chr6:30641728|30641942 hsa-miR-6165 1 0 0
chr6:30641728|30641942 hsa-miR-8085 1 0 0
chr6:30641728|30641942 hsa-miR-8089 1 0 0
chr6:30641728|30641942 hsa-miR-12128 1 1 0
chr6:30641728|30641942 hsa-miR-4433b-3p 1 0 0
chr6:30641728|30641942 hsa-miR-6734-5p 1 0 0
chr6:30641728|30641942 hsa-miR-4731-5p 1 0 0
chr6:30641728|30641942 hsa-miR-4433a-3p 1 0 0
chr6:30641728|30641942 hsa-miR-671-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6825-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6894-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6799-5p 1 0 0
chr6:30641728|30641942 hsa-miR-3192-5p 0 1 0
chr6:30641728|30641942 hsa-miR-6880-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6746-5p 1 1 0
chr6:30641728|30641942 hsa-miR-4722-5p 1 1 0
chr6:30641728|30641942 hsa-miR-3064-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6741-5p 0 1 0
chr6:30641728|30641942 hsa-miR-6727-5p 1 0 0
chr6:30641728|30641942 hsa-miR-3622b-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6721-5p 1 0 0
chr6:30641728|30641942 hsa-miR-23b-5p 0 1 0
chr6:30641728|30641942 hsa-miR-3605-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6716-5p 1 0 0
chr6:30641728|30641942 hsa-miR-4697-3p 0 1 0
chr6:30641728|30641942 hsa-miR-2467-5p 0 1 0
chr6:30641728|30641942 hsa-miR-23a-5p 1 1 0
chr6:30641728|30641942 hsa-miR-6798-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6770-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6760-5p 1 0 0
chr6:30641728|30641942 hsa-miR-3156-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6888-5p 1 0 0
chr6:30641728|30641942 hsa-miR-1226-5p 1 0 0
chr6:30641728|30641942 hsa-miR-4640-5p 1 1 0
chr6:30641728|30641942 hsa-miR-885-3p 1 0 0
chr6:30641728|30641942 hsa-miR-92b-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6749-5p 1 1 0
chr6:30641728|30641942 hsa-miR-6824-5p 1 0 0
chr6:30641728|30641942 hsa-miR-7156-3p 1 0 0
chr6:30641728|30641942 hsa-miR-194-3p 0 1 0
chr6:30641728|30641942 hsa-miR-423-5p 1 0 0
chr6:30641728|30641942 hsa-miR-518c-5p 0 1 0
chr6:30641728|30641942 hsa-miR-514a-5p 0 1 0
chr6:30641728|30641942 hsa-miR-219b-3p 0 1 0
chr6:30641728|30641942 hsa-miR-4763-3p 1 0 0
chr6:30641728|30641942 hsa-miR-6816-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6870-5p 1 0 0
chr6:30641728|30641942 hsa-miR-1343-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6743-5p 1 1 0
chr6:30641728|30641942 hsa-miR-6752-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6803-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6851-5p 1 0 0
chr6:30641728|30641942 hsa-miR-7107-5p 1 0 0
chr6:30641728|30641942 hsa-miR-7110-5p 1 0 0
chr6:30641728|30641942 hsa-miR-11181-3p 1 0 0
chr6:30641728|30641942 hsa-miR-6722-3p 1 0 0
chr6:30641728|30641942 hsa-miR-6763-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6774-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6788-5p 0 1 0
chr6:30641728|30641942 hsa-miR-6797-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6879-5p 1 1 0
chr6:30641728|30641942 hsa-miR-7111-5p 1 0 0
chr6:30641728|30641942 hsa-miR-3620-5p 1 0 0
chr6:30641728|30641942 hsa-miR-4728-5p 1 0 0
chr6:30641728|30641942 hsa-miR-5196-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6780b-5p 1 1 0
chr6:30641728|30641942 hsa-miR-1909-3p 1 0 0
chr6:30641728|30641942 hsa-miR-4632-5p 1 1 0
chr6:30641728|30641942 hsa-miR-4725-3p 1 0 0
chr6:30641728|30641942 hsa-miR-4726-5p 1 1 0
chr6:30641728|30641942 hsa-miR-4745-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6735-5p 0 1 0
chr6:30641728|30641942 hsa-miR-6777-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6794-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6795-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6846-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6848-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6858-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6889-5p 0 1 0
chr6:30641728|30641942 hsa-miR-4436b-3p 0 1 0
chr6:30641728|30641942 hsa-miR-4723-5p 1 0 0
chr6:30641728|30641942 hsa-miR-939-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6511b-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6731-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6758-5p 1 0 0
chr6:30641728|30641942 hsa-miR-3173-3p 1 0 0
chr6:30641728|30641942 hsa-miR-4646-5p 1 0 0
chr6:30641728|30641942 hsa-miR-4747-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6891-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6750-5p 1 0 0
chr6:30641728|30641942 hsa-miR-3184-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6791-5p 1 0 0
chr6:30641728|30641942 hsa-miR-6762-5p 1 0 0
chr6:30641728|30641942 hsa-miR-4782-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:30641728|30641942
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence MSISSRGTQGPRWPGWDHSTAPEYQGAMTAPTDSKSSLPLAALLLHLPGPQSLPFDL
Nucleotide Sequence TTGTCCATCTCATCCAGAGGAACCCAGGGTCCTCGTTGGCCCGGCTGGGACCATTCCACTGCCCCAGAATACCAGGGGGCCATGACAGCACCCACTGACAGTAAGAGCTCACTTCCCTTGGCTGCCCTTCTCCTGCATCTCCCAGGCCCCCAGAGTCTCCCCTTCGATCTT
CircID chr6:30641728|30641942
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MTSPEQFLINQGLCPSHPEEPRVLVGPAGTIPLPQNTRGP
Nucleotide Sequence CTGACCTCTCCAGAGCAATTCCTGATTAACCAAGGGCTTTGTCCATCTCATCCAGAGGAACCCAGGGTCCTCGTTGGCCCGGCTGGGACCATTCCACTGCCCCAGAATACCAGGGGGCCATGA
CircID chr6:30641728|30641942
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MTVRAHFPWLPFSCISQAPRVSPSIF
Nucleotide Sequence CTGACAGTAAGAGCTCACTTCCCTTGGCTGCCCTTCTCCTGCATCTCCCAGGCCCCCAGAGTCTCCCCTTCGATCTTT
CircID chr6:30641728|30641942
ORF Type ORF4
Protein Length 62
Nucleotide Length 186
Protein Sequence MGDAGEGQPREVSSYCQWVLSWPPGILGQWNGPSRANEDPGFLWMRWTKPLVNQELLWRGQG
Nucleotide Sequence CTGGGAGATGCAGGAGAAGGGCAGCCAAGGGAAGTGAGCTCTTACTGTCAGTGGGTGCTGTCATGGCCCCCTGGTATTCTGGGGCAGTGGAATGGTCCCAGCCGGGCCAACGAGGACCCTGGGTTCCTCTGGATGAGATGGACAAAGCCCTTGGTTAATCAGGAATTGCTCTGGAGAGGTCAGGGG
CircID chr6:30641728|30641942
ORF Type ORF5
Protein Length 37
Nucleotide Length 114
Protein Sequence MSVGAVMAPWYSGAVEWSQPGQRGPWVPLDEMDKALG
Nucleotide Sequence CTGTCAGTGGGTGCTGTCATGGCCCCCTGGTATTCTGGGGCAGTGGAATGGTCCCAGCCGGGCCAACGAGGACCCTGGGTTCCTCTGGATGAGATGGACAAAGCCCTTGGTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab