CircRNA Information

General Information
circRNA Basic Information
CircID chr6:30650037|30650292
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence TGGATTCTTTTTTGGAACCATGAGGCAGGCATAGAAATATATTATAAACATTTTCCTGAGAAAATGATGTTCCAGCCAGGCACGGTGGCTCAAAGTGCTGTAATCCCAGCACTTTGGGAGGCTTAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAACACAAAAATCAGCCAGGCATGGTGGCAGACGCCTATAATCCCAGCTACTCAGGAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:30650037|30650292 hsa-miR-17-5p 0 0 1
chr6:30650037|30650292 hsa-miR-17-3p 0 0 1
chr6:30650037|30650292 hsa-miR-20a-5p 0 0 1
chr6:30650037|30650292 hsa-miR-20a-3p 0 0 1
chr6:30650037|30650292 hsa-miR-93-5p 0 0 1
chr6:30650037|30650292 hsa-miR-93-3p 0 0 1
chr6:30650037|30650292 hsa-miR-106a-5p 0 0 1
chr6:30650037|30650292 hsa-miR-106a-3p 0 0 1
chr6:30650037|30650292 hsa-miR-197-5p 0 0 1
chr6:30650037|30650292 hsa-miR-197-3p 0 0 1
chr6:30650037|30650292 hsa-miR-150-5p 0 0 1
chr6:30650037|30650292 hsa-miR-150-3p 0 0 1
chr6:30650037|30650292 hsa-miR-186-5p 0 0 1
chr6:30650037|30650292 hsa-miR-186-3p 0 0 1
chr6:30650037|30650292 hsa-miR-106b-5p 0 0 1
chr6:30650037|30650292 hsa-miR-106b-3p 0 0 1
chr6:30650037|30650292 hsa-miR-302a-5p 0 0 1
chr6:30650037|30650292 hsa-miR-302a-3p 0 0 1
chr6:30650037|30650292 hsa-miR-302b-5p 0 0 1
chr6:30650037|30650292 hsa-miR-302b-3p 0 0 1
chr6:30650037|30650292 hsa-miR-302c-5p 0 0 1
chr6:30650037|30650292 hsa-miR-302c-3p 0 0 1
chr6:30650037|30650292 hsa-miR-302d-5p 0 0 1
chr6:30650037|30650292 hsa-miR-302d-3p 0 0 1
chr6:30650037|30650292 hsa-miR-372-5p 0 0 1
chr6:30650037|30650292 hsa-miR-372-3p 0 0 1
chr6:30650037|30650292 hsa-miR-373-5p 0 0 1
chr6:30650037|30650292 hsa-miR-373-3p 0 0 1
chr6:30650037|30650292 hsa-miR-374a-5p 0 0 1
chr6:30650037|30650292 hsa-miR-374a-3p 0 0 1
chr6:30650037|30650292 hsa-miR-346 0 1 1
chr6:30650037|30650292 hsa-miR-20b-5p 0 0 1
chr6:30650037|30650292 hsa-miR-20b-3p 0 0 1
chr6:30650037|30650292 hsa-miR-520e-5p 0 0 1
chr6:30650037|30650292 hsa-miR-520e-3p 0 0 1
chr6:30650037|30650292 hsa-miR-520b-5p 0 0 1
chr6:30650037|30650292 hsa-miR-520b-3p 0 0 1
chr6:30650037|30650292 hsa-miR-519d-5p 0 0 1
chr6:30650037|30650292 hsa-miR-519d-3p 0 0 1
chr6:30650037|30650292 hsa-miR-520g-5p 0 0 1
chr6:30650037|30650292 hsa-miR-520g-3p 0 0 1
chr6:30650037|30650292 hsa-miR-520h 0 0 1
chr6:30650037|30650292 hsa-miR-588 0 0 1
chr6:30650037|30650292 hsa-miR-599 0 0 1
chr6:30650037|30650292 hsa-miR-640 0 1 1
chr6:30650037|30650292 hsa-miR-661 1 0 1
chr6:30650037|30650292 hsa-miR-411-5p 0 0 1
chr6:30650037|30650292 hsa-miR-411-3p 0 0 1
chr6:30650037|30650292 hsa-miR-873-5p 0 0 1
chr6:30650037|30650292 hsa-miR-873-3p 0 0 1
chr6:30650037|30650292 hsa-miR-374b-5p 0 0 1
chr6:30650037|30650292 hsa-miR-374b-3p 0 0 1
chr6:30650037|30650292 hsa-miR-1200 0 0 1
chr6:30650037|30650292 hsa-miR-1266-5p 0 0 1
chr6:30650037|30650292 hsa-miR-1266-3p 0 0 1
chr6:30650037|30650292 hsa-miR-302e 0 0 1
chr6:30650037|30650292 hsa-miR-125a-3p 0 0 1
chr6:30650037|30650292 hsa-miR-512-3p 0 0 1
chr6:30650037|30650292 hsa-miR-532-5p 0 0 1
chr6:30650037|30650292 hsa-miR-520d-3p 0 0 1
chr6:30650037|30650292 hsa-miR-520a-3p 0 0 1
chr6:30650037|30650292 hsa-miR-520c-3p 0 0 1
chr6:30650037|30650292 hsa-miR-369-3p 0 0 1
chr6:30650037|30650292 hsa-miR-550 0 0 1
chr6:30650037|30650292 hsa-miR-1254 0 0 1
chr6:30650037|30650292 hsa-miR-762 1 0 0
chr6:30650037|30650292 hsa-miR-764 1 0 0
chr6:30650037|30650292 hsa-miR-1303 0 1 0
chr6:30650037|30650292 hsa-miR-2861 1 0 0
chr6:30650037|30650292 hsa-miR-3159 0 1 0
chr6:30650037|30650292 hsa-miR-4425 0 1 0
chr6:30650037|30650292 hsa-miR-4452 1 1 0
chr6:30650037|30650292 hsa-miR-4682 1 0 0
chr6:30650037|30650292 hsa-miR-12115 1 0 0
chr6:30650037|30650292 hsa-miR-6747-3p 0 1 0
chr6:30650037|30650292 hsa-miR-6861-5p 1 0 0
chr6:30650037|30650292 hsa-miR-218-1-3p 0 1 0
chr6:30650037|30650292 hsa-miR-29b-2-5p 0 1 0
chr6:30650037|30650292 hsa-miR-6757-5p 1 0 0
chr6:30650037|30650292 hsa-miR-3064-5p 0 1 0
chr6:30650037|30650292 hsa-miR-4474-3p 1 0 0
chr6:30650037|30650292 hsa-miR-6842-3p 0 1 0
chr6:30650037|30650292 hsa-miR-4763-5p 0 1 0
chr6:30650037|30650292 hsa-miR-3186-5p 1 1 0
chr6:30650037|30650292 hsa-miR-6894-3p 0 1 0
chr6:30650037|30650292 hsa-miR-4715-3p 0 1 0
chr6:30650037|30650292 hsa-miR-767-5p 0 1 0
chr6:30650037|30650292 hsa-miR-5585-3p 1 1 0
chr6:30650037|30650292 hsa-miR-378a-5p 0 1 0
chr6:30650037|30650292 hsa-miR-6824-5p 1 0 0
chr6:30650037|30650292 hsa-miR-6869-5p 1 0 0
chr6:30650037|30650292 hsa-miR-6504-3p 0 1 0
chr6:30650037|30650292 hsa-miR-660-3p 0 1 0
chr6:30650037|30650292 hsa-miR-6726-5p 1 0 0
chr6:30650037|30650292 hsa-miR-6813-5p 1 0 0
chr6:30650037|30650292 hsa-miR-3187-5p 1 0 0
chr6:30650037|30650292 hsa-miR-6855-5p 0 1 0
chr6:30650037|30650292 hsa-miR-3116 1 0 0
chr6:30650037|30650292 hsa-miR-619-5p 0 1 0
chr6:30650037|30650292 hsa-miR-135a-2-3p 1 0 0
chr6:30650037|30650292 hsa-miR-3622b-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:30650037|30650292
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MRSGVQDQPGQHGETPSLLKTQKSARHGGRRL
Nucleotide Sequence CTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAACACAAAAATCAGCCAGGCATGGTGGCAGACGCCTATAA
CircID chr6:30650037|30650292
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MPKPPKVLGLQHFEPPCLAGTSFSQENVYNIFLCLPHGSKKES
Nucleotide Sequence CTGCCTAAGCCTCCCAAAGTGCTGGGATTACAGCACTTTGAGCCACCGTGCCTGGCTGGAACATCATTTTCTCAGGAAAATGTTTATAATATATTTCTATGCCTGCCTCATGGTTCCAAAAAAGAATCC
CircID chr6:30650037|30650292
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MSSWDYRRLPPCLADFCVFSRDGVSPCWPGWS
Nucleotide Sequence CTGAGTAGCTGGGATTATAGGCGTCTGCCACCATGCCTGGCTGATTTTTGTGTTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGA
CircID chr6:30650037|30650292
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MSHRAWLEHHFLRKMFIIYFYACLMVPKKNP
Nucleotide Sequence TTGAGCCACCGTGCCTGGCTGGAACATCATTTTCTCAGGAAAATGTTTATAATATATTTCTATGCCTGCCTCATGGTTCCAAAAAAGAATCCA
CircID chr6:30650037|30650292
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MIFVFLVEMGFHHVGQAGLELLTSGDPPA
Nucleotide Sequence CTGATTTTTGTGTTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab