CircRNA Information

General Information
circRNA Basic Information
CircID chr6:31268945|31269167
Strand -
CircType exon
Host Gene ENSG00000204525.13;
Algorism CIRI2;
Sequence CTCTCTGGAACAGGAAAGATGATCGGGGAGGGAACACAGGTCAGTGTGGGGACAGGGGTCACGGTGGACACGGGGGTGGGCTGTCTCTCCACCTCCTCACATTATGCTAACAGGAACGCAGACACATTCAGGTGCCTTTGCAGAAAGAGATGCCAGAGGCTCTTGAAGTCACAAAGGAGAGGTGTGAAGAAATCCTGCATCTCAGTCCCACACAGGCAGCTGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:31268945|31269167 hsa-miR-22-5p 0 0 1
chr6:31268945|31269167 hsa-miR-22-3p 0 0 1
chr6:31268945|31269167 hsa-miR-143-5p 0 0 1
chr6:31268945|31269167 hsa-miR-143-3p 0 0 1
chr6:31268945|31269167 hsa-miR-134-5p 0 0 1
chr6:31268945|31269167 hsa-miR-134-3p 0 0 1
chr6:31268945|31269167 hsa-miR-185-5p 0 0 1
chr6:31268945|31269167 hsa-miR-185-3p 0 0 1
chr6:31268945|31269167 hsa-miR-377-5p 0 0 1
chr6:31268945|31269167 hsa-miR-377-3p 0 0 1
chr6:31268945|31269167 hsa-miR-335-5p 0 0 1
chr6:31268945|31269167 hsa-miR-335-3p 0 0 1
chr6:31268945|31269167 hsa-miR-346 1 0 1
chr6:31268945|31269167 hsa-miR-412-5p 0 0 1
chr6:31268945|31269167 hsa-miR-412-3p 0 0 1
chr6:31268945|31269167 hsa-miR-527 0 0 1
chr6:31268945|31269167 hsa-miR-506-5p 0 0 1
chr6:31268945|31269167 hsa-miR-506-3p 0 0 1
chr6:31268945|31269167 hsa-miR-617 0 0 1
chr6:31268945|31269167 hsa-miR-631 0 0 1
chr6:31268945|31269167 hsa-miR-632 1 1 1
chr6:31268945|31269167 hsa-miR-758-5p 0 0 1
chr6:31268945|31269167 hsa-miR-758-3p 0 0 1
chr6:31268945|31269167 hsa-miR-1228-5p 0 0 1
chr6:31268945|31269167 hsa-miR-1228-3p 0 0 1
chr6:31268945|31269167 hsa-miR-1286 0 0 1
chr6:31268945|31269167 hsa-miR-1294 0 0 1
chr6:31268945|31269167 hsa-miR-339-5p 0 1 1
chr6:31268945|31269167 hsa-miR-525-5p 0 0 1
chr6:31268945|31269167 hsa-miR-520a-5p 0 0 1
chr6:31268945|31269167 hsa-miR-876-5p 0 1 1
chr6:31268945|31269167 hsa-miR-518a-5p 0 0 1
chr6:31268945|31269167 hsa-miR-642 0 0 1
chr6:31268945|31269167 hsa-miR-644 0 0 1
chr6:31268945|31269167 hsa-miR-124 0 0 1
chr6:31268945|31269167 hsa-miR-544 0 0 1
chr6:31268945|31269167 hsa-miR-220a 0 0 1
chr6:31268945|31269167 hsa-miR-147 0 0 1
chr6:31268945|31269167 hsa-miR-581 0 1 0
chr6:31268945|31269167 hsa-miR-3164 0 1 0
chr6:31268945|31269167 hsa-miR-4648 0 1 0
chr6:31268945|31269167 hsa-miR-4656 1 1 0
chr6:31268945|31269167 hsa-miR-4682 1 0 0
chr6:31268945|31269167 hsa-miR-8052 0 1 0
chr6:31268945|31269167 hsa-miR-9898 1 0 0
chr6:31268945|31269167 hsa-miR-6749-3p 1 0 0
chr6:31268945|31269167 hsa-miR-124-5p 0 1 0
chr6:31268945|31269167 hsa-miR-6825-5p 0 1 0
chr6:31268945|31269167 hsa-miR-1233-3p 1 0 0
chr6:31268945|31269167 hsa-miR-210-5p 1 0 0
chr6:31268945|31269167 hsa-miR-6880-5p 0 1 0
chr6:31268945|31269167 hsa-miR-1301-3p 0 1 0
chr6:31268945|31269167 hsa-miR-3151-5p 1 0 0
chr6:31268945|31269167 hsa-miR-6796-5p 0 1 0
chr6:31268945|31269167 hsa-miR-6774-3p 0 1 0
chr6:31268945|31269167 hsa-miR-6735-3p 1 1 0
chr6:31268945|31269167 hsa-miR-6858-3p 1 0 0
chr6:31268945|31269167 hsa-miR-6884-3p 1 0 0
chr6:31268945|31269167 hsa-miR-7108-3p 1 0 0
chr6:31268945|31269167 hsa-miR-1247-5p 1 0 0
chr6:31268945|31269167 hsa-miR-4707-3p 1 0 0
chr6:31268945|31269167 hsa-miR-6757-3p 0 1 0
chr6:31268945|31269167 hsa-miR-619-3p 0 1 0
chr6:31268945|31269167 hsa-miR-642b-5p 0 1 0
chr6:31268945|31269167 hsa-miR-4640-3p 1 0 0
chr6:31268945|31269167 hsa-miR-6825-3p 1 0 0
chr6:31268945|31269167 hsa-miR-574-5p 0 1 0
chr6:31268945|31269167 hsa-miR-4646-3p 1 0 0
chr6:31268945|31269167 hsa-miR-7106-3p 1 0 0
chr6:31268945|31269167 hsa-miR-6813-3p 1 0 0
chr6:31268945|31269167 hsa-miR-1224-3p 1 0 0
chr6:31268945|31269167 hsa-miR-6752-3p 1 0 0
chr6:31268945|31269167 hsa-miR-3605-3p 1 1 0
chr6:31268945|31269167 hsa-miR-6760-3p 1 0 0
chr6:31268945|31269167 hsa-miR-6748-3p 0 1 0
chr6:31268945|31269167 hsa-miR-4433a-5p 1 0 0
chr6:31268945|31269167 hsa-miR-6798-3p 1 0 0
chr6:31268945|31269167 hsa-miR-6759-3p 1 0 0
chr6:31268945|31269167 hsa-miR-6800-3p 0 1 0
chr6:31268945|31269167 hsa-miR-6732-3p 1 0 0
chr6:31268945|31269167 hsa-miR-3162-3p 1 0 0
chr6:31268945|31269167 hsa-miR-6808-3p 0 1 0
chr6:31268945|31269167 hsa-miR-6503-3p 1 0 0
chr6:31268945|31269167 hsa-miR-124-3p 0 1 0
chr6:31268945|31269167 hsa-miR-6813-5p 1 0 0
chr6:31268945|31269167 hsa-miR-6851-5p 0 1 0
chr6:31268945|31269167 hsa-miR-10401-5p 0 1 0
chr6:31268945|31269167 hsa-miR-675-5p 1 0 0
chr6:31268945|31269167 hsa-miR-6858-5p 0 1 0
chr6:31268945|31269167 hsa-miR-4769-5p 0 1 0
chr6:31268945|31269167 hsa-miR-324-3p 1 0 0
chr6:31268945|31269167 hsa-miR-6784-3p 1 0 0
chr6:31268945|31269167 hsa-miR-6810-3p 1 0 0
chr6:31268945|31269167 hsa-miR-10392-3p 1 0 0
chr6:31268945|31269167 hsa-miR-7114-3p 1 0 0
chr6:31268945|31269167 hsa-miR-4690-3p 1 0 0
chr6:31268945|31269167 hsa-miR-6820-3p 0 1 0
chr6:31268945|31269167 hsa-miR-450b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:31268945|31269167
ORF Type ORF1
Protein Length 68
Nucleotide Length 204
Protein Sequence MIGEGTQVSVGTGVTVDTGVGCLSTSSHYANRNADTFRCLCRKRCQRLLKSQRRGVKKSCISVPHRQL
Nucleotide Sequence ATGATCGGGGAGGGAACACAGGTCAGTGTGGGGACAGGGGTCACGGTGGACACGGGGGTGGGCTGTCTCTCCACCTCCTCACATTATGCTAACAGGAACGCAGACACATTCAGGTGCCTTTGCAGAAAGAGATGCCAGAGGCTCTTGAAGTCACAAAGGAGAGGTGTGAAGAAATCCTGCATCTCAGTCCCACACAGGCAGCTG
CircID chr6:31268945|31269167
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MQKEMPEALEVTKERCEEILHLSPTQAA
Nucleotide Sequence TTGCAGAAAGAGATGCCAGAGGCTCTTGAAGTCACAAAGGAGAGGTGTGAAGAAATCCTGCATCTCAGTCCCACACAGGCAGCT
CircID chr6:31268945|31269167
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MRCRISSHLSFVTSRASGISFCKGT
Nucleotide Sequence CTGAGATGCAGGATTTCTTCACACCTCTCCTTTGTGACTTCAAGAGCCTCTGGCATCTCTTTCTGCAAAGGCACCTGA
CircID chr6:31268945|31269167
ORF Type ORF4
Protein Length 37
Nucleotide Length 114
Protein Sequence MCGTEMQDFFTPLLCDFKSLWHLFLQRHLNVSAFLLA
Nucleotide Sequence CTGTGTGGGACTGAGATGCAGGATTTCTTCACACCTCTCCTTTGTGACTTCAAGAGCCTCTGGCATCTCTTTCTGCAAAGGCACCTGAATGTGTCTGCGTTCCTGTTAGCATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab