CircRNA Information

General Information
circRNA Basic Information
CircID chr6:31356390|31356757
Strand +
CircType exon
Host Gene ENSG00000204525.13;
Algorism CIRI2;
Sequence AAGGCCCAGGCACAGACTGACCGAGAGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCCGGGGCGCAGGTCACGACTCCCCATCCCCCACGTACGGCCCGGGTCGCCCCGAGTCTCCGGGTCCGAGATCCGCCTCCCTGAGGCCGCGGGACCCGCCCAGACCCTCGACCGGCGAGAGCCCCAGGCGCGTTTACCCGGTTTCATTTTCAGTTGAGGCCAAAATCCCCGCGGGTTGGTCGGGGCGGGGCGGGGCTCGGGGGACTGGGCTGACCGCGGGGCCGGGGCCAGGGTCTCACACCCTCCAGAGCATGTACGGCTGCGACGTGGGGCCGGACGGGCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:31356390|31356757 hsa-miR-484 0 0 1
chr6:31356390|31356757 hsa-miR-523-5p 0 0 1
chr6:31356390|31356757 hsa-miR-523-3p 0 0 1
chr6:31356390|31356757 hsa-miR-504-5p 0 0 1
chr6:31356390|31356757 hsa-miR-504-3p 0 0 1
chr6:31356390|31356757 hsa-miR-612 1 0 1
chr6:31356390|31356757 hsa-miR-622 0 0 1
chr6:31356390|31356757 hsa-miR-625-5p 0 0 1
chr6:31356390|31356757 hsa-miR-625-3p 0 0 1
chr6:31356390|31356757 hsa-miR-631 0 0 1
chr6:31356390|31356757 hsa-miR-661 1 1 1
chr6:31356390|31356757 hsa-miR-662 1 1 1
chr6:31356390|31356757 hsa-miR-657 0 1 1
chr6:31356390|31356757 hsa-miR-668-5p 0 0 1
chr6:31356390|31356757 hsa-miR-668-3p 0 0 1
chr6:31356390|31356757 hsa-miR-939-5p 0 0 1
chr6:31356390|31356757 hsa-miR-939-3p 0 0 1
chr6:31356390|31356757 hsa-miR-1182 0 1 1
chr6:31356390|31356757 hsa-miR-1290 0 0 1
chr6:31356390|31356757 hsa-miR-1247-5p 0 0 1
chr6:31356390|31356757 hsa-miR-1247-3p 0 0 1
chr6:31356390|31356757 hsa-miR-1266-5p 0 0 1
chr6:31356390|31356757 hsa-miR-1266-3p 0 0 1
chr6:31356390|31356757 hsa-miR-1275 0 0 1
chr6:31356390|31356757 hsa-miR-1321 0 1 1
chr6:31356390|31356757 hsa-miR-1225-3p 1 1 1
chr6:31356390|31356757 hsa-miR-769-5p 0 0 1
chr6:31356390|31356757 hsa-miR-615-3p 0 1 1
chr6:31356390|31356757 hsa-miR-542-5p 0 0 1
chr6:31356390|31356757 hsa-miR-550 0 0 1
chr6:31356390|31356757 hsa-miR-1285 0 0 1
chr6:31356390|31356757 hsa-miR-516b 0 0 1
chr6:31356390|31356757 hsa-miR-1254 0 0 1
chr6:31356390|31356757 hsa-miR-453 0 0 1
chr6:31356390|31356757 hsa-miR-608 1 0 0
chr6:31356390|31356757 hsa-miR-636 1 0 0
chr6:31356390|31356757 hsa-miR-637 1 1 0
chr6:31356390|31356757 hsa-miR-762 1 0 0
chr6:31356390|31356757 hsa-miR-760 1 0 0
chr6:31356390|31356757 hsa-miR-1181 1 0 0
chr6:31356390|31356757 hsa-miR-1268a 1 0 0
chr6:31356390|31356757 hsa-miR-1538 1 0 0
chr6:31356390|31356757 hsa-miR-3183 1 0 0
chr6:31356390|31356757 hsa-miR-3196 1 0 0
chr6:31356390|31356757 hsa-miR-4292 1 0 0
chr6:31356390|31356757 hsa-miR-3621 1 1 0
chr6:31356390|31356757 hsa-miR-3661 0 1 0
chr6:31356390|31356757 hsa-miR-1268b 1 0 0
chr6:31356390|31356757 hsa-miR-4449 1 0 0
chr6:31356390|31356757 hsa-miR-4479 1 0 0
chr6:31356390|31356757 hsa-miR-4525 1 1 0
chr6:31356390|31356757 hsa-miR-4651 1 0 0
chr6:31356390|31356757 hsa-miR-4675 1 0 0
chr6:31356390|31356757 hsa-miR-4706 1 0 0
chr6:31356390|31356757 hsa-miR-4739 1 1 0
chr6:31356390|31356757 hsa-miR-4741 1 1 0
chr6:31356390|31356757 hsa-miR-4767 1 0 0
chr6:31356390|31356757 hsa-miR-5093 0 1 0
chr6:31356390|31356757 hsa-miR-5698 1 0 0
chr6:31356390|31356757 hsa-miR-7706 1 0 0
chr6:31356390|31356757 hsa-miR-9899 1 0 0
chr6:31356390|31356757 hsa-miR-12128 0 1 0
chr6:31356390|31356757 hsa-miR-4665-3p 1 0 0
chr6:31356390|31356757 hsa-miR-6765-5p 1 0 0
chr6:31356390|31356757 hsa-miR-3150a-3p 1 0 0
chr6:31356390|31356757 hsa-miR-6894-5p 1 1 0
chr6:31356390|31356757 hsa-miR-1233-3p 1 1 0
chr6:31356390|31356757 hsa-miR-6799-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6804-5p 0 1 0
chr6:31356390|31356757 hsa-miR-6515-5p 0 1 0
chr6:31356390|31356757 hsa-miR-874-5p 0 1 0
chr6:31356390|31356757 hsa-miR-6840-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6727-5p 0 1 0
chr6:31356390|31356757 hsa-miR-6742-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6716-5p 1 0 0
chr6:31356390|31356757 hsa-miR-3180-3p 1 0 0
chr6:31356390|31356757 hsa-miR-6796-5p 1 0 0
chr6:31356390|31356757 hsa-miR-4725-5p 0 1 0
chr6:31356390|31356757 hsa-miR-6732-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6782-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6821-5p 1 0 0
chr6:31356390|31356757 hsa-miR-615-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6786-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6852-5p 0 1 0
chr6:31356390|31356757 hsa-miR-7109-5p 1 1 0
chr6:31356390|31356757 hsa-miR-4738-3p 1 0 0
chr6:31356390|31356757 hsa-miR-7108-3p 0 1 0
chr6:31356390|31356757 hsa-miR-6749-5p 1 0 0
chr6:31356390|31356757 hsa-miR-3648 1 0 0
chr6:31356390|31356757 hsa-miR-4787-5p 1 0 0
chr6:31356390|31356757 hsa-miR-149-3p 1 0 0
chr6:31356390|31356757 hsa-miR-6789-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6781-5p 1 1 0
chr6:31356390|31356757 hsa-miR-6877-5p 1 0 0
chr6:31356390|31356757 hsa-miR-516b-5p 0 1 0
chr6:31356390|31356757 hsa-miR-5010-5p 1 1 0
chr6:31356390|31356757 hsa-miR-4707-5p 0 1 0
chr6:31356390|31356757 hsa-miR-6813-3p 0 1 0
chr6:31356390|31356757 hsa-miR-4758-3p 1 0 0
chr6:31356390|31356757 hsa-miR-4649-3p 1 0 0
chr6:31356390|31356757 hsa-miR-518c-5p 0 1 0
chr6:31356390|31356757 hsa-miR-1199-3p 1 0 0
chr6:31356390|31356757 hsa-miR-5587-3p 0 1 0
chr6:31356390|31356757 hsa-miR-3678-5p 0 1 0
chr6:31356390|31356757 hsa-miR-10400-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6769b-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6816-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6870-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6775-5p 1 0 0
chr6:31356390|31356757 hsa-miR-1343-5p 1 0 0
chr6:31356390|31356757 hsa-miR-3180 1 0 0
chr6:31356390|31356757 hsa-miR-5001-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6737-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6752-5p 1 1 0
chr6:31356390|31356757 hsa-miR-6754-5p 0 1 0
chr6:31356390|31356757 hsa-miR-6756-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6803-5p 1 0 0
chr6:31356390|31356757 hsa-miR-7107-5p 1 0 0
chr6:31356390|31356757 hsa-miR-1249-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6751-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6763-5p 1 0 0
chr6:31356390|31356757 hsa-miR-5196-5p 1 0 0
chr6:31356390|31356757 hsa-miR-10396a-5p 1 0 0
chr6:31356390|31356757 hsa-miR-10396b-5p 1 0 0
chr6:31356390|31356757 hsa-miR-1237-5p 1 0 0
chr6:31356390|31356757 hsa-miR-328-5p 1 0 0
chr6:31356390|31356757 hsa-miR-3689a-3p 1 0 0
chr6:31356390|31356757 hsa-miR-4701-3p 1 0 0
chr6:31356390|31356757 hsa-miR-4725-3p 1 0 0
chr6:31356390|31356757 hsa-miR-4745-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6846-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6848-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6889-5p 1 0 0
chr6:31356390|31356757 hsa-miR-10396a-3p 1 1 0
chr6:31356390|31356757 hsa-miR-10396b-3p 1 1 0
chr6:31356390|31356757 hsa-miR-4665-5p 1 1 0
chr6:31356390|31356757 hsa-miR-10398-3p 0 1 0
chr6:31356390|31356757 hsa-miR-4472 0 1 0
chr6:31356390|31356757 hsa-miR-3689d 0 1 0
chr6:31356390|31356757 hsa-miR-6791-5p 1 0 0
chr6:31356390|31356757 hsa-miR-6753-3p 1 0 0
chr6:31356390|31356757 hsa-miR-10401-3p 1 0 0
chr6:31356390|31356757 hsa-miR-6805-3p 1 0 0
chr6:31356390|31356757 hsa-miR-6775-3p 1 1 0
chr6:31356390|31356757 hsa-miR-10392-3p 1 1 0
chr6:31356390|31356757 hsa-miR-4756-5p 0 1 0
chr6:31356390|31356757 hsa-miR-4690-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:31356390|31356757
ORF Type ORF1
Protein Length 74
Nucleotide Length 225
Protein Sequence MTERACGTCAATTTRARPVSDPGPGRRSRLPIPHVRPGSPRVSGSEIRLPEAAGPAQTLDRREPQARLPGFIFS
Nucleotide Sequence CTGACCGAGAGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCCGGGGCGCAGGTCACGACTCCCCATCCCCCACGTACGGCCCGGGTCGCCCCGAGTCTCCGGGTCCGAGATCCGCCTCCCTGAGGCCGCGGGACCCGCCCAGACCCTCGACCGGCGAGAGCCCCAGGCGCGTTTACCCGGTTTCATTTTCAGTTGA
CircID chr6:31356390|31356757
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MVGAGRGSGDWADRGAGARVSHPPEHVRLRRGAGRA
Nucleotide Sequence TTGGTCGGGGCGGGGCGGGGCTCGGGGGACTGGGCTGACCGCGGGGCCGGGGCCAGGGTCTCACACCCTCCAGAGCATGTACGGCTGCGACGTGGGGCCGGACGGGCG
CircID chr6:31356390|31356757
ORF Type ORF3
Protein Length 68
Nucleotide Length 204
Protein Sequence MRPRDPPRPSTGESPRRVYPVSFSVEAKIPAGWSGRGGARGTGLTAGPGPGSHTLQSMYGCDVGPDGR
Nucleotide Sequence CTGAGGCCGCGGGACCCGCCCAGACCCTCGACCGGCGAGAGCCCCAGGCGCGTTTACCCGGTTTCATTTTCAGTTGAGGCCAAAATCCCCGCGGGTTGGTCGGGGCGGGGCGGGGCTCGGGGGACTGGGCTGACCGCGGGGCCGGGGCCAGGGTCTCACACCCTCCAGAGCATGTACGGCTGCGACGTGGGGCCGGACGGGCGC
CircID chr6:31356390|31356757
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MEGVRPWPRPRGQPSPPSPAPPRPTRGDFGLN
Nucleotide Sequence CTGGAGGGTGTGAGACCCTGGCCCCGGCCCCGCGGTCAGCCCAGTCCCCCGAGCCCCGCCCCGCCCCGACCAACCCGCGGGGATTTTGGCCTCAACTGA
CircID chr6:31356390|31356757
ORF Type ORF5
Protein Length 37
Nucleotide Length 114
Protein Sequence MGLSPVEGLGGSRGLREADLGPGDSGRPGPYVGDGES
Nucleotide Sequence CTGGGGCTCTCGCCGGTCGAGGGTCTGGGCGGGTCCCGCGGCCTCAGGGAGGCGGATCTCGGACCCGGAGACTCGGGGCGACCCGGGCCGTACGTGGGGGATGGGGAGTCGTGA
CircID chr6:31356390|31356757
ORF Type ORF6
Protein Length 105
Nucleotide Length 315
Protein Sequence MAPAPRSAQSPEPRPAPTNPRGFWPQLKMKPGKRAWGSRRSRVWAGPAASGRRISDPETRGDPGRTWGMGSRDLRPGPGSLTGLALVVVAAQVPQALSVSLCLGL
Nucleotide Sequence CTGGCCCCGGCCCCGCGGTCAGCCCAGTCCCCCGAGCCCCGCCCCGCCCCGACCAACCCGCGGGGATTTTGGCCTCAACTGAAAATGAAACCGGGTAAACGCGCCTGGGGCTCTCGCCGGTCGAGGGTCTGGGCGGGTCCCGCGGCCTCAGGGAGGCGGATCTCGGACCCGGAGACTCGGGGCGACCCGGGCCGTACGTGGGGGATGGGGAGTCGTGACCTGCGCCCCGGGCCGGGGTCACTCACCGGCCTCGCTCTGGTTGTAGTAGCCGCGCAGGTTCCGCAGGCTCTCTCGGTCAGTCTGTGCCTGGGCCTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab