CircRNA Information

General Information
circRNA Basic Information
CircID chr6:31642228|31642372
Strand +
CircType exon
Host Gene ENSG00000204463.11;
Algorism CIRI2;
Sequence CTCCTCCACCCCCACCACCTGCCCCAGAGCAGCAGACCATGCCCCCACCAGGCTCCCCTTCTGGTGGCGCAGGGAGTCCTGGAGGCCTGGGTCTTGAGAGCCTGTCACCGGAGTTTTTTACCTCAGTGGTGCAGGGTGTGCTCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:31642228|31642372 hsa-let-7b-5p 0 0 1
chr6:31642228|31642372 hsa-let-7b-3p 0 0 1
chr6:31642228|31642372 hsa-let-7c-5p 0 0 1
chr6:31642228|31642372 hsa-let-7c-3p 0 0 1
chr6:31642228|31642372 hsa-let-7d-5p 0 0 1
chr6:31642228|31642372 hsa-let-7d-3p 0 0 1
chr6:31642228|31642372 hsa-let-7e-5p 0 0 1
chr6:31642228|31642372 hsa-let-7e-3p 0 0 1
chr6:31642228|31642372 hsa-miR-98-5p 0 0 1
chr6:31642228|31642372 hsa-miR-98-3p 0 0 1
chr6:31642228|31642372 hsa-let-7g-5p 0 0 1
chr6:31642228|31642372 hsa-let-7g-3p 0 0 1
chr6:31642228|31642372 hsa-let-7i-5p 0 0 1
chr6:31642228|31642372 hsa-let-7i-3p 0 0 1
chr6:31642228|31642372 hsa-miR-326 0 0 1
chr6:31642228|31642372 hsa-miR-484 0 0 1
chr6:31642228|31642372 hsa-miR-202-5p 0 0 1
chr6:31642228|31642372 hsa-miR-202-3p 0 0 1
chr6:31642228|31642372 hsa-miR-608 0 0 1
chr6:31642228|31642372 hsa-miR-637 0 0 1
chr6:31642228|31642372 hsa-miR-765 0 0 1
chr6:31642228|31642372 hsa-miR-541-5p 0 0 1
chr6:31642228|31642372 hsa-miR-541-3p 0 0 1
chr6:31642228|31642372 hsa-miR-665 0 0 1
chr6:31642228|31642372 hsa-miR-939-5p 0 0 1
chr6:31642228|31642372 hsa-miR-939-3p 0 0 1
chr6:31642228|31642372 hsa-miR-513c-5p 0 0 1
chr6:31642228|31642372 hsa-miR-513c-3p 0 0 1
chr6:31642228|31642372 hsa-miR-486-3p 0 0 1
chr6:31642228|31642372 hsa-miR-767-5p 0 0 1
chr6:31642228|31642372 hsa-miR-654-5p 0 0 1
chr6:31642228|31642372 hsa-miR-330-5p 0 0 1
chr6:31642228|31642372 hsa-miR-542-3p 0 0 1
chr6:31642228|31642372 hsa-let-7a 0 0 1
chr6:31642228|31642372 hsa-let-7f 0 0 1
chr6:31642228|31642372 hsa-miR-650 1 0 0
chr6:31642228|31642372 hsa-miR-760 1 0 0
chr6:31642228|31642372 hsa-miR-1268a 1 0 0
chr6:31642228|31642372 hsa-miR-2861 1 0 0
chr6:31642228|31642372 hsa-miR-3141 1 0 0
chr6:31642228|31642372 hsa-miR-3154 1 0 0
chr6:31642228|31642372 hsa-miR-3196 1 0 0
chr6:31642228|31642372 hsa-miR-4298 1 0 0
chr6:31642228|31642372 hsa-miR-4253 1 0 0
chr6:31642228|31642372 hsa-miR-3621 1 0 0
chr6:31642228|31642372 hsa-miR-3665 1 0 0
chr6:31642228|31642372 hsa-miR-1268b 1 0 0
chr6:31642228|31642372 hsa-miR-4466 1 0 0
chr6:31642228|31642372 hsa-miR-4488 1 0 0
chr6:31642228|31642372 hsa-miR-4688 1 0 0
chr6:31642228|31642372 hsa-miR-4706 1 0 0
chr6:31642228|31642372 hsa-miR-5090 1 0 0
chr6:31642228|31642372 hsa-miR-6090 1 0 0
chr6:31642228|31642372 hsa-miR-8089 1 0 0
chr6:31642228|31642372 hsa-miR-12115 1 0 0
chr6:31642228|31642372 hsa-miR-3194-3p 1 0 0
chr6:31642228|31642372 hsa-miR-6765-5p 1 0 0
chr6:31642228|31642372 hsa-miR-4687-3p 1 0 0
chr6:31642228|31642372 hsa-miR-1227-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6727-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6721-5p 1 0 0
chr6:31642228|31642372 hsa-miR-3180-3p 1 0 0
chr6:31642228|31642372 hsa-miR-6829-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6827-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6821-5p 1 0 0
chr6:31642228|31642372 hsa-miR-1226-5p 1 0 0
chr6:31642228|31642372 hsa-miR-1229-5p 1 0 0
chr6:31642228|31642372 hsa-miR-4640-5p 1 0 0
chr6:31642228|31642372 hsa-miR-7113-3p 1 0 0
chr6:31642228|31642372 hsa-miR-1228-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6749-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6824-5p 1 0 0
chr6:31642228|31642372 hsa-miR-4750-5p 1 0 0
chr6:31642228|31642372 hsa-miR-1207-5p 1 0 0
chr6:31642228|31642372 hsa-miR-4763-3p 1 0 0
chr6:31642228|31642372 hsa-miR-6787-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6816-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6870-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6893-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6775-5p 1 0 0
chr6:31642228|31642372 hsa-miR-1343-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6726-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6743-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6756-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6803-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6851-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6751-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6879-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6780b-5p 1 0 0
chr6:31642228|31642372 hsa-miR-328-5p 1 0 0
chr6:31642228|31642372 hsa-miR-4685-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6846-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6848-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6883-5p 1 0 0
chr6:31642228|31642372 hsa-miR-6791-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:31642228|31642372
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MPQSSRPCPHQAPLLVAQGVLEAWVLRACHRSFLPQWCRVCS
Nucleotide Sequence CTGCCCCAGAGCAGCAGACCATGCCCCCACCAGGCTCCCCTTCTGGTGGCGCAGGGAGTCCTGGAGGCCTGGGTCTTGAGAGCCTGTCACCGGAGTTTTTTACCTCAGTGGTGCAGGGTGTGCTCA
CircID chr6:31642228|31642372
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MPPPGSPSGGAGSPGGLGLESLSPEFFTSVVQGVL
Nucleotide Sequence ATGCCCCCACCAGGCTCCCCTTCTGGTGGCGCAGGGAGTCCTGGAGGCCTGGGTCTTGAGAGCCTGTCACCGGAGTTTTTTACCTCAGTGGTGCAGGGTGTGCTC
CircID chr6:31642228|31642372
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence LSTPCTTEVKNSGDRLSRPRPPGLPAPPEGEPGGGMVCCSGAGGGGGG
Nucleotide Sequence CTGAGCACACCCTGCACCACTGAGGTAAAAAACTCCGGTGACAGGCTCTCAAGACCCAGGCCTCCAGGACTCCCTGCGCCACCAGAAGGGGAGCCTGGTGGGGGCATGGTCTGCTGCTCTGGGGCAGGTGGTGGGGGTGGAGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab