CircRNA Information

General Information
circRNA Basic Information
CircID chr6:31645042|31645167
Strand -
CircType exon
Host Gene ENSG00000204463.11;
Algorism CIRI2;
Sequence CTGGCGGGGGAGCCCCCTCAGCTGAGGACTCGACATTGGTAGAAGACGGAGCCACGGATGAGGCCTGCCCAGGACCAGGGGGAGGTGCCTCTGCATTGGGAGTTGGGGGGGGCCGAGTCCCATTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:31645042|31645167 hsa-miR-150-5p 0 0 1
chr6:31645042|31645167 hsa-miR-150-3p 0 0 1
chr6:31645042|31645167 hsa-miR-612 1 0 1
chr6:31645042|31645167 hsa-miR-423-5p 0 0 1
chr6:31645042|31645167 hsa-miR-1207-3p 0 0 1
chr6:31645042|31645167 hsa-miR-331-3p 0 0 1
chr6:31645042|31645167 hsa-miR-1285 0 0 1
chr6:31645042|31645167 hsa-miR-6860 1 0 0
chr6:31645042|31645167 hsa-miR-149-5p 1 0 0
chr6:31645042|31645167 hsa-miR-6861-5p 1 0 0
chr6:31645042|31645167 hsa-miR-423-3p 1 0 0
chr6:31645042|31645167 hsa-miR-4763-3p 1 0 0
chr6:31645042|31645167 hsa-miR-6722-3p 1 0 0
chr6:31645042|31645167 hsa-miR-6791-5p 1 0 0
chr6:31645042|31645167 hsa-miR-6862-3p 1 0 0
chr6:31645042|31645167 hsa-miR-6829-3p 1 0 0
chr6:31645042|31645167 hsa-miR-10392-3p 1 0 0
chr6:31645042|31645167 hsa-miR-6827-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:31645042|31645167
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MVEDGATDEACPGPGGGASALGVGGGRVPF
Nucleotide Sequence TTGGTAGAAGACGGAGCCACGGATGAGGCCTGCCCAGGACCAGGGGGAGGTGCCTCTGCATTGGGAGTTGGGGGGGGCCGAGTCCCATTT
CircID chr6:31645042|31645167
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MGLGPPQLPMQRHLPLVLGRPHPWLRLLPMSSPQLRGLPRQ
Nucleotide Sequence ATGGGACTCGGCCCCCCCCAACTCCCAATGCAGAGGCACCTCCCCCTGGTCCTGGGCAGGCCTCATCCGTGGCTCCGTCTTCTACCAATGTCGAGTCCTCAGCTGAGGGGGCTCCCCCGCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab