CircRNA Information

General Information
circRNA Basic Information
CircID chr6:31946193|31946431
Strand +
CircType exon
Host Gene ENSG00000244255.4;
Algorism CIRI2;
Sequence CCCCTCCAGAGAGCAGGATCCCTGGGGCCGGGCCAAAGACCATGGAGTGGTGGTCACACCTGAAGAGAAAGGCTGATGAAGCCTGGCCCCAAAAGGCCAAGGAGGGATGCTGGAGACAGCAGGAAGGGAAGGTTACCCTCGCTTACCTCCAGACAAGAGGCCCAAGATAAAGGGCATCAGGCAGAGTTGGGGGCTGAGATTGCTCCCCATGGCGTTGGAAGGCAGGAGAGAAGCTGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:31946193|31946431 hsa-miR-204-5p 0 0 1
chr6:31946193|31946431 hsa-miR-204-3p 0 0 1
chr6:31946193|31946431 hsa-miR-211-5p 0 0 1
chr6:31946193|31946431 hsa-miR-211-3p 0 0 1
chr6:31946193|31946431 hsa-miR-216a-5p 0 0 1
chr6:31946193|31946431 hsa-miR-216a-3p 0 0 1
chr6:31946193|31946431 hsa-miR-370-5p 0 0 1
chr6:31946193|31946431 hsa-miR-370-3p 0 0 1
chr6:31946193|31946431 hsa-miR-328-5p 0 0 1
chr6:31946193|31946431 hsa-miR-328-3p 0 0 1
chr6:31946193|31946431 hsa-miR-326 0 0 1
chr6:31946193|31946431 hsa-miR-623 0 0 1
chr6:31946193|31946431 hsa-miR-626 0 0 1
chr6:31946193|31946431 hsa-miR-632 0 0 1
chr6:31946193|31946431 hsa-miR-635 0 0 1
chr6:31946193|31946431 hsa-miR-766-5p 0 0 1
chr6:31946193|31946431 hsa-miR-766-3p 0 0 1
chr6:31946193|31946431 hsa-miR-938 0 0 1
chr6:31946193|31946431 hsa-miR-939-5p 0 0 1
chr6:31946193|31946431 hsa-miR-939-3p 0 0 1
chr6:31946193|31946431 hsa-miR-942-5p 0 0 1
chr6:31946193|31946431 hsa-miR-942-3p 0 0 1
chr6:31946193|31946431 hsa-miR-1231 0 1 1
chr6:31946193|31946431 hsa-miR-1236-5p 0 0 1
chr6:31946193|31946431 hsa-miR-1236-3p 0 0 1
chr6:31946193|31946431 hsa-miR-125a-3p 0 0 1
chr6:31946193|31946431 hsa-miR-324-5p 0 1 1
chr6:31946193|31946431 hsa-miR-338-3p 0 0 1
chr6:31946193|31946431 hsa-miR-330-5p 0 0 1
chr6:31946193|31946431 hsa-miR-9 0 0 1
chr6:31946193|31946431 hsa-miR-516b 0 0 1
chr6:31946193|31946431 hsa-miR-1201 0 0 1
chr6:31946193|31946431 hsa-miR-638 1 0 0
chr6:31946193|31946431 hsa-miR-1305 0 1 0
chr6:31946193|31946431 hsa-miR-1538 0 1 0
chr6:31946193|31946431 hsa-miR-1976 0 1 0
chr6:31946193|31946431 hsa-miR-3943 0 1 0
chr6:31946193|31946431 hsa-miR-4522 1 1 0
chr6:31946193|31946431 hsa-miR-6747-3p 0 1 0
chr6:31946193|31946431 hsa-miR-4726-3p 1 0 0
chr6:31946193|31946431 hsa-miR-3934-5p 0 1 0
chr6:31946193|31946431 hsa-miR-1227-5p 0 1 0
chr6:31946193|31946431 hsa-miR-874-3p 1 0 0
chr6:31946193|31946431 hsa-miR-1915-5p 1 0 0
chr6:31946193|31946431 hsa-miR-6845-3p 0 1 0
chr6:31946193|31946431 hsa-miR-23a-5p 1 0 0
chr6:31946193|31946431 hsa-miR-615-5p 1 0 0
chr6:31946193|31946431 hsa-miR-4640-5p 0 1 0
chr6:31946193|31946431 hsa-miR-4713-3p 1 0 0
chr6:31946193|31946431 hsa-miR-6809-3p 0 1 0
chr6:31946193|31946431 hsa-miR-4667-3p 0 1 0
chr6:31946193|31946431 hsa-miR-516b-5p 0 1 0
chr6:31946193|31946431 hsa-miR-6793-3p 0 1 0
chr6:31946193|31946431 hsa-miR-331-5p 1 0 0
chr6:31946193|31946431 hsa-miR-361-3p 0 1 0
chr6:31946193|31946431 hsa-miR-3074-5p 0 1 0
chr6:31946193|31946431 hsa-miR-4746-5p 1 1 0
chr6:31946193|31946431 hsa-miR-6880-3p 1 0 0
chr6:31946193|31946431 hsa-miR-518c-5p 0 1 0
chr6:31946193|31946431 hsa-miR-6734-3p 0 1 0
chr6:31946193|31946431 hsa-miR-6808-3p 1 1 0
chr6:31946193|31946431 hsa-miR-1343-5p 1 0 0
chr6:31946193|31946431 hsa-miR-6754-5p 1 0 0
chr6:31946193|31946431 hsa-miR-320a-5p 0 1 0
chr6:31946193|31946431 hsa-miR-6866-3p 0 1 0
chr6:31946193|31946431 hsa-miR-1914-3p 1 0 0
chr6:31946193|31946431 hsa-miR-6762-5p 0 1 0
chr6:31946193|31946431 hsa-miR-6893-3p 0 1 0
chr6:31946193|31946431 hsa-miR-5581-5p 0 1 0
chr6:31946193|31946431 hsa-miR-4768-5p 0 1 0
chr6:31946193|31946431 hsa-miR-6876-3p 0 1 0
chr6:31946193|31946431 hsa-miR-6764-5p 0 1 0
chr6:31946193|31946431 hsa-miR-5006-3p 0 1 0
chr6:31946193|31946431 hsa-miR-6833-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:31946193|31946431
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MMKPGPKRPRRDAGDSRKGRLPSLTSRQEAQDKGHQAELGAEIAPHGVGRQERSW
Nucleotide Sequence CTGATGAAGCCTGGCCCCAAAAGGCCAAGGAGGGATGCTGGAGACAGCAGGAAGGGAAGGTTACCCTCGCTTACCTCCAGACAAGAGGCCCAAGATAAAGGGCATCAGGCAGAGTTGGGGGCTGAGATTGCTCCCCATGGCGTTGGAAGGCAGGAGAGAAGCTGG
CircID chr6:31946193|31946431
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence MAPKGQGGMLETAGREGYPRLPPDKRPKIKGIRQSWGLRLLPMALEGRREAG
Nucleotide Sequence CTGGCCCCAAAAGGCCAAGGAGGGATGCTGGAGACAGCAGGAAGGGAAGGTTACCCTCGCTTACCTCCAGACAAGAGGCCCAAGATAAAGGGCATCAGGCAGAGTTGGGGGCTGAGATTGCTCCCCATGGCGTTGGAAGGCAGGAGAGAAGCTGGG
CircID chr6:31946193|31946431
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MEWWSHLKRKADEAWPQKAKEGCWRQQEGKVTLAYLQTRGPR
Nucleotide Sequence ATGGAGTGGTGGTCACACCTGAAGAGAAAGGCTGATGAAGCCTGGCCCCAAAAGGCCAAGGAGGGATGCTGGAGACAGCAGGAAGGGAAGGTTACCCTCGCTTACCTCCAGACAAGAGGCCCAAGATAA
CircID chr6:31946193|31946431
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MEVSEGNLPFLLSPASLLGLLGPGFISLSLQV
Nucleotide Sequence CTGGAGGTAAGCGAGGGTAACCTTCCCTTCCTGCTGTCTCCAGCATCCCTCCTTGGCCTTTTGGGGCCAGGCTTCATCAGCCTTTCTCTTCAGGTGTGA
CircID chr6:31946193|31946431
ORF Type ORF5
Protein Length 33
Nucleotide Length 99
Protein Sequence MAFWGQASSAFLFRCDHHSMVFGPAPGILLSGG
Nucleotide Sequence TTGGCCTTTTGGGGCCAGGCTTCATCAGCCTTTCTCTTCAGGTGTGACCACCACTCCATGGTCTTTGGCCCGGCCCCAGGGATCCTGCTCTCTGGAGGG
CircID chr6:31946193|31946431
ORF Type ORF6
Protein Length 30
Nucleotide Length 93
Protein Sequence MPSNAMGSNLSPQLCLMPFILGLLSGGKRG
Nucleotide Sequence CTGCCTTCCAACGCCATGGGGAGCAATCTCAGCCCCCAACTCTGCCTGATGCCCTTTATCTTGGGCCTCTTGTCTGGAGGTAAGCGAGGGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab