CircRNA Information

General Information
circRNA Basic Information
CircID chr6:32180193|32180377
Strand +
CircType exon
Host Gene ENSG00000204308.7;
Algorism CIRI2;
Sequence CCTCAATACTGATTCTTCTCTGGCTGGAGGTGGGCAGGAAGCAGACATAGCTCAAATACTGAGCAGCCAAAAAAAGAAGAAGATGGCGAGAAACAGGAAGAGGGAATCCTGCCAGCTGGAGGCTGGGTGACCCTGTCCCAGATCCACACCTGTGGGAGAGAGGAAAGCTGTGGAAGCATATGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:32180193|32180377 hsa-miR-150-5p 0 0 1
chr6:32180193|32180377 hsa-miR-150-3p 0 0 1
chr6:32180193|32180377 hsa-miR-346 -20 0 1
chr6:32180193|32180377 hsa-miR-552-5p 0 0 1
chr6:32180193|32180377 hsa-miR-552-3p 0 0 1
chr6:32180193|32180377 hsa-miR-604 -5 0 1
chr6:32180193|32180377 hsa-miR-610 -8 0 1
chr6:32180193|32180377 hsa-miR-632 -16 1 1
chr6:32180193|32180377 hsa-miR-647 -12 0 1
chr6:32180193|32180377 hsa-miR-766-5p 0 0 1
chr6:32180193|32180377 hsa-miR-766-3p 0 0 1
chr6:32180193|32180377 hsa-miR-1236-5p 0 0 1
chr6:32180193|32180377 hsa-miR-1236-3p 0 0 1
chr6:32180193|32180377 hsa-miR-1238-5p 0 0 1
chr6:32180193|32180377 hsa-miR-1238-3p 0 0 1
chr6:32180193|32180377 hsa-miR-1253 0 1 1
chr6:32180193|32180377 hsa-miR-129-5p -1 0 1
chr6:32180193|32180377 hsa-miR-532-3p -11 0 1
chr6:32180193|32180377 hsa-miR-1224-3p -7 1 1
chr6:32180193|32180377 hsa-miR-1207-3p -9 0 1
chr6:32180193|32180377 hsa-miR-654-3p -16 1 1
chr6:32180193|32180377 hsa-miR-767-3p -6 0 1
chr6:32180193|32180377 hsa-miR-188-3p -10 1 1
chr6:32180193|32180377 hsa-miR-1207-5p -12 0 1
chr6:32180193|32180377 hsa-miR-1302 -2 0 1
chr6:32180193|32180377 hsa-miR-516a-3p -8 0 1
chr6:32180193|32180377 hsa-miR-642 0 0 1
chr6:32180193|32180377 hsa-miR-4298 -7 1 0
chr6:32180193|32180377 hsa-miR-4314 -2 1 0
chr6:32180193|32180377 hsa-miR-4326 -11 1 0
chr6:32180193|32180377 hsa-miR-3911 -8 1 0
chr6:32180193|32180377 hsa-miR-4752 0 1 0
chr6:32180193|32180377 hsa-miR-6879-3p -5 1 0
chr6:32180193|32180377 hsa-miR-6720-5p -15 1 0
chr6:32180193|32180377 hsa-miR-16-1-3p -10 1 0
chr6:32180193|32180377 hsa-miR-3934-5p -13 1 0
chr6:32180193|32180377 hsa-miR-6873-3p -10 1 0
chr6:32180193|32180377 hsa-miR-7110-3p -18 1 0
chr6:32180193|32180377 hsa-miR-6832-3p -12 1 0
chr6:32180193|32180377 hsa-miR-877-3p -12 1 0
chr6:32180193|32180377 hsa-miR-4707-3p -22 1 0
chr6:32180193|32180377 hsa-miR-7111-3p -16 1 0
chr6:32180193|32180377 hsa-miR-2115-5p -10 1 0
chr6:32180193|32180377 hsa-miR-3074-5p -15 1 0
chr6:32180193|32180377 hsa-miR-3124-3p -14 1 0
chr6:32180193|32180377 hsa-miR-7152-5p -18 1 0
chr6:32180193|32180377 hsa-miR-642a-5p -12 1 0
chr6:32180193|32180377 hsa-miR-6885-3p -21 1 0
chr6:32180193|32180377 hsa-miR-6862-3p -16 1 0
chr6:32180193|32180377 hsa-miR-3059-5p -24 1 0
chr6:32180193|32180377 hsa-miR-3130-5p -18 1 0
chr6:32180193|32180377 hsa-miR-6769b-3p -12 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:32180193|32180377
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MPAGGWVTLSQIHTCGREESCGSIC
Nucleotide Sequence CTGCCAGCTGGAGGCTGGGTGACCCTGTCCCAGATCCACACCTGTGGGAGAGAGGAAAGCTGTGGAAGCATATGC
CircID chr6:32180193|32180377
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MAGGGQEADIAQILSSQKKKKMARNRKRESCQLEAG
Nucleotide Sequence CTGGCTGGAGGTGGGCAGGAAGCAGACATAGCTCAAATACTGAGCAGCCAAAAAAAGAAGAAGATGGCGAGAAACAGGAAGAGGGAATCCTGCCAGCTGGAGGCTGGGTGA
CircID chr6:32180193|32180377
ORF Type ORF3
Protein Length 58
Nucleotide Length 177
Protein Sequence MLPQLSSLPQVWIWDRVTQPPAGRIPSSCFSPSSSFFGCSVFELCLLPAHLQPEKNQY
Nucleotide Sequence ATGCTTCCACAGCTTTCCTCTCTCCCACAGGTGTGGATCTGGGACAGGGTCACCCAGCCTCCAGCTGGCAGGATTCCCTCTTCCTGTTTCTCGCCATCTTCTTCTTTTTTTGGCTGCTCAGTATTTGAGCTATGTCTGCTTCCTGCCCACCTCCAGCCAGAGAAGAATCAGTATTGA
CircID chr6:32180193|32180377
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MAGFPLPVSRHLLLFLAAQYLSYVCFLPTSSQRRISIE
Nucleotide Sequence CTGGCAGGATTCCCTCTTCCTGTTTCTCGCCATCTTCTTCTTTTTTTGGCTGCTCAGTATTTGAGCTATGTCTGCTTCCTGCCCACCTCCAGCCAGAGAAGAATCAGTATTGAG
CircID chr6:32180193|32180377
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MGQGHPASSWQDSLFLFLAIFFFFWLLSI
Nucleotide Sequence CTGGGACAGGGTCACCCAGCCTCCAGCTGGCAGGATTCCCTCTTCCTGTTTCTCGCCATCTTCTTCTTTTTTTGGCTGCTCAGTATTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab