CircRNA Information

General Information
circRNA Basic Information
CircID chr6:32578819|32579094
Strand -
CircType exon
Host Gene ENSG00000196126.9;
Algorism CIRI2;
Sequence AGGGTGAATACAGATGCACGGGAGGCCATACGGTTTAGGCAAAGGGGAGCACAAAAGTTGAAGATGAGGCGCTGCCATCAATGCTGGGACTTCAGGCCAAGGGCAGGAGCTGAGGAAGCCACAAGGGAGGACATTTTCTGCAGTTGCCGAACCAGTAGCAACCAGGTCCTGAGAAAGCCCTCTCTTGTGGAAGAATAACTGCCAAGCAGGAAAGCTTTTCATCCTGCAAAGCCGGGGCAGAAAGTTCTTCCTTGAATGTGGTCATCTGCATTTCAG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:32578819|32579094 hsa-miR-34a-5p 0 0 1
chr6:32578819|32579094 hsa-miR-34a-3p 0 0 1
chr6:32578819|32579094 hsa-miR-181c-5p 0 0 1
chr6:32578819|32579094 hsa-miR-181c-3p 0 0 1
chr6:32578819|32579094 hsa-miR-370-5p 0 0 1
chr6:32578819|32579094 hsa-miR-370-3p 0 0 1
chr6:32578819|32579094 hsa-miR-449a 0 0 1
chr6:32578819|32579094 hsa-miR-492 0 0 1
chr6:32578819|32579094 hsa-miR-181d-5p 0 0 1
chr6:32578819|32579094 hsa-miR-181d-3p 0 0 1
chr6:32578819|32579094 hsa-miR-517-5p 0 0 1
chr6:32578819|32579094 hsa-miR-517b-3p 0 0 1
chr6:32578819|32579094 hsa-miR-623 0 0 1
chr6:32578819|32579094 hsa-miR-630 0 0 1
chr6:32578819|32579094 hsa-miR-631 0 0 1
chr6:32578819|32579094 hsa-miR-449b-5p 0 0 1
chr6:32578819|32579094 hsa-miR-449b-3p 0 0 1
chr6:32578819|32579094 hsa-miR-298 0 0 1
chr6:32578819|32579094 hsa-miR-938 0 0 1
chr6:32578819|32579094 hsa-miR-1286 0 0 1
chr6:32578819|32579094 hsa-miR-1266-5p 0 0 1
chr6:32578819|32579094 hsa-miR-1266-3p 0 0 1
chr6:32578819|32579094 hsa-miR-885-3p 0 0 1
chr6:32578819|32579094 hsa-miR-338-3p 0 0 1
chr6:32578819|32579094 hsa-miR-324-3p 0 0 1
chr6:32578819|32579094 hsa-miR-34c-5p 0 0 1
chr6:32578819|32579094 hsa-miR-509-3-5p 0 0 1
chr6:32578819|32579094 hsa-miR-509-5p 0 0 1
chr6:32578819|32579094 hsa-miR-516a-3p 0 0 1
chr6:32578819|32579094 hsa-miR-181a 0 0 1
chr6:32578819|32579094 hsa-miR-181b 0 0 1
chr6:32578819|32579094 hsa-miR-218 0 0 1
chr6:32578819|32579094 hsa-miR-544 0 0 1
chr6:32578819|32579094 hsa-miR-203 0 0 1
chr6:32578819|32579094 hsa-miR-650 1 0 0
chr6:32578819|32579094 hsa-miR-2861 1 0 0
chr6:32578819|32579094 hsa-miR-3661 1 0 0
chr6:32578819|32579094 hsa-miR-3714 1 0 0
chr6:32578819|32579094 hsa-miR-3909 1 0 0
chr6:32578819|32579094 hsa-miR-4512 1 0 0
chr6:32578819|32579094 hsa-miR-4515 1 0 0
chr6:32578819|32579094 hsa-miR-4730 1 0 0
chr6:32578819|32579094 hsa-miR-4780 1 0 0
chr6:32578819|32579094 hsa-miR-7706 1 0 0
chr6:32578819|32579094 hsa-miR-6749-3p 1 0 0
chr6:32578819|32579094 hsa-miR-6894-5p 1 0 0
chr6:32578819|32579094 hsa-miR-6720-5p 1 0 0
chr6:32578819|32579094 hsa-miR-6787-3p 1 0 0
chr6:32578819|32579094 hsa-miR-6882-3p 1 0 0
chr6:32578819|32579094 hsa-miR-6763-3p 1 0 0
chr6:32578819|32579094 hsa-miR-4640-5p 1 0 0
chr6:32578819|32579094 hsa-miR-6749-5p 1 0 0
chr6:32578819|32579094 hsa-miR-6769a-3p 1 0 0
chr6:32578819|32579094 hsa-miR-5001-5p 1 0 0
chr6:32578819|32579094 hsa-miR-4685-3p 1 0 0
chr6:32578819|32579094 hsa-miR-5008-3p 1 0 0
chr6:32578819|32579094 hsa-miR-6877-3p 1 0 0
chr6:32578819|32579094 hsa-miR-4757-5p 1 0 0
chr6:32578819|32579094 hsa-miR-6792-3p 1 0 0
chr6:32578819|32579094 hsa-miR-330-5p 1 0 0
chr6:32578819|32579094 hsa-miR-6744-3p 1 0 0
chr6:32578819|32579094 hsa-miR-33b-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:32578819|32579094
ORF Type ORF1
Protein Length 46
Nucleotide Length 141
Protein Sequence MKMRRCHQCWDFRPRAGAEEATREDIFCSCRTSSNQVLRKPSLVEE
Nucleotide Sequence TTGAAGATGAGGCGCTGCCATCAATGCTGGGACTTCAGGCCAAGGGCAGGAGCTGAGGAAGCCACAAGGGAGGACATTTTCTGCAGTTGCCGAACCAGTAGCAACCAGGTCCTGAGAAAGCCCTCTCTTGTGGAAGAATAA
CircID chr6:32578819|32579094
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MWKNNCQAGKLFILQSRGRKFFLECGHLHF
Nucleotide Sequence TTGTGGAAGAATAACTGCCAAGCAGGAAAGCTTTTCATCCTGCAAAGCCGGGGCAGAAAGTTCTTCCTTGAATGTGGTCATCTGCATTTC
CircID chr6:32578819|32579094
ORF Type ORF3
Protein Length 80
Nucleotide Length 240
Protein Sequence MPRLCRMKSFPAWQLFFHKRGLSQDLVATGSATAENVLPCGFLSSCPWPEVPALMAAPHLQLLCSPLPKPYGLPCICIHP
Nucleotide Sequence CTGCCCCGGCTTTGCAGGATGAAAAGCTTTCCTGCTTGGCAGTTATTCTTCCACAAGAGAGGGCTTTCTCAGGACCTGGTTGCTACTGGTTCGGCAACTGCAGAAAATGTCCTCCCTTGTGGCTTCCTCAGCTCCTGCCCTTGGCCTGAAGTCCCAGCATTGATGGCAGCGCCTCATCTTCAACTTTTGTGCTCCCCTTTGCCTAAACCGTATGGCCTCCCGTGCATCTGTATTCACCCT
CircID chr6:32578819|32579094
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence MLGSYSSTREGFLRTWLLLVRQLQKMSSLVASSAPALGLKSQH
Nucleotide Sequence CTGCTTGGCAGTTATTCTTCCACAAGAGAGGGCTTTCTCAGGACCTGGTTGCTACTGGTTCGGCAACTGCAGAAAATGTCCTCCCTTGTGGCTTCCTCAGCTCCTGCCCTTGGCCTGAAGTCCCAGCATTGA
CircID chr6:32578819|32579094
ORF Type ORF5
Protein Length 59
Nucleotide Length 180
Protein Sequence MQMTTFKEELSAPALQDEKLSCLAVILPQERAFSGPGCYWFGNCRKCPPLWLPQLLPLA
Nucleotide Sequence ATGCAGATGACCACATTCAAGGAAGAACTTTCTGCCCCGGCTTTGCAGGATGAAAAGCTTTCCTGCTTGGCAGTTATTCTTCCACAAGAGAGGGCTTTCTCAGGACCTGGTTGCTACTGGTTCGGCAACTGCAGAAAATGTCCTCCCTTGTGGCTTCCTCAGCTCCTGCCCTTGGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab