CircRNA Information

General Information
circRNA Basic Information
CircID chr6:33081133|33081250
Strand +
CircType exon
Host Gene ENSG00000223865.9;
Algorism CIRI2;
Sequence CTCCATCTCCACACCATACCCTTGTGCGCTGTCCTGTGGCTTCCTTTTTTCACCCCACATGCAGTCAGCTGCCAGGCCTGATGAAGTCCCGGGGGTCTCTCTGCTCTCGTCCTCCTCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:33081133|33081250 hsa-miR-217-5p 0 0 1
chr6:33081133|33081250 hsa-miR-217-3p 0 0 1
chr6:33081133|33081250 hsa-miR-608 1 0 1
chr6:33081133|33081250 hsa-miR-620 0 0 1
chr6:33081133|33081250 hsa-miR-1270 0 0 1
chr6:33081133|33081250 hsa-miR-671-5p 1 0 1
chr6:33081133|33081250 hsa-miR-491-5p 0 0 1
chr6:33081133|33081250 hsa-miR-885-3p 1 0 1
chr6:33081133|33081250 hsa-miR-299-3p 0 0 1
chr6:33081133|33081250 hsa-miR-342-5p 0 0 1
chr6:33081133|33081250 hsa-miR-1183 1 0 0
chr6:33081133|33081250 hsa-miR-2861 1 0 0
chr6:33081133|33081250 hsa-miR-4322 1 0 0
chr6:33081133|33081250 hsa-miR-3918 1 0 0
chr6:33081133|33081250 hsa-miR-3937 1 0 0
chr6:33081133|33081250 hsa-miR-1268b 1 0 0
chr6:33081133|33081250 hsa-miR-4436a 1 0 0
chr6:33081133|33081250 hsa-miR-4651 1 0 0
chr6:33081133|33081250 hsa-miR-4656 1 0 0
chr6:33081133|33081250 hsa-miR-4739 1 0 0
chr6:33081133|33081250 hsa-miR-4784 1 0 0
chr6:33081133|33081250 hsa-miR-5572 1 0 0
chr6:33081133|33081250 hsa-miR-6745 1 0 0
chr6:33081133|33081250 hsa-miR-6860 1 0 0
chr6:33081133|33081250 hsa-miR-8073 1 0 0
chr6:33081133|33081250 hsa-miR-11399 1 0 0
chr6:33081133|33081250 hsa-miR-12118 1 0 0
chr6:33081133|33081250 hsa-miR-6747-5p 1 0 0
chr6:33081133|33081250 hsa-miR-7106-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6825-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6894-5p 1 0 0
chr6:33081133|33081250 hsa-miR-7847-3p 1 0 0
chr6:33081133|33081250 hsa-miR-3064-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6776-5p 1 0 0
chr6:33081133|33081250 hsa-miR-7845-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6742-5p 1 0 0
chr6:33081133|33081250 hsa-miR-3180-3p 1 0 0
chr6:33081133|33081250 hsa-miR-6796-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6827-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6798-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6881-5p 1 0 0
chr6:33081133|33081250 hsa-miR-5008-5p 1 0 0
chr6:33081133|33081250 hsa-miR-4640-5p 1 0 0
chr6:33081133|33081250 hsa-miR-4717-3p 1 0 0
chr6:33081133|33081250 hsa-miR-6749-5p 1 0 0
chr6:33081133|33081250 hsa-miR-4446-3p 1 0 0
chr6:33081133|33081250 hsa-miR-423-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6812-5p 1 0 0
chr6:33081133|33081250 hsa-miR-3180 1 0 0
chr6:33081133|33081250 hsa-miR-6737-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6756-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6819-5p 1 0 0
chr6:33081133|33081250 hsa-miR-10401-5p 1 0 0
chr6:33081133|33081250 hsa-miR-11181-3p 1 0 0
chr6:33081133|33081250 hsa-miR-6879-5p 1 0 0
chr6:33081133|33081250 hsa-miR-7111-5p 1 0 0
chr6:33081133|33081250 hsa-miR-4632-5p 1 0 0
chr6:33081133|33081250 hsa-miR-4649-5p 1 0 0
chr6:33081133|33081250 hsa-miR-4745-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6729-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6735-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6738-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6794-5p 1 0 0
chr6:33081133|33081250 hsa-miR-3187-5p 1 0 0
chr6:33081133|33081250 hsa-miR-365b-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6731-5p 1 0 0
chr6:33081133|33081250 hsa-miR-4665-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6855-5p 1 0 0
chr6:33081133|33081250 hsa-miR-3173-3p 1 0 0
chr6:33081133|33081250 hsa-miR-3679-5p 1 0 0
chr6:33081133|33081250 hsa-miR-6791-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:33081133|33081250
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MSCGFLFSPHMQSAARPDEVPGVSLLSSSS
Nucleotide Sequence CTGTCCTGTGGCTTCCTTTTTTCACCCCACATGCAGTCAGCTGCCAGGCCTGATGAAGTCCCGGGGGTCTCTCTGCTCTCGTCCTCCTCA
CircID chr6:33081133|33081250
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MAADCMWGEKRKPQDSAQGYGVEME
Nucleotide Sequence CTGGCAGCTGACTGCATGTGGGGTGAAAAAAGGAAGCCACAGGACAGCGCACAAGGGTATGGTGTGGAGATGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab