CircRNA Information

General Information
circRNA Basic Information
CircID chr6:33209707|33210047
Strand -
CircType exon
Host Gene ENSG00000204227.4;
Algorism CIRI2;
Sequence ATGCTGAAGAATACGATGACCACCAAGGAGTGCCTCCACAGATTCTGCTCTGACTGCATTGTCACAGCCCTACGGAGCGGGTAATAGGAGAGACATGTTTGAGATGAGATGAAGGGGTACAAAGTTAGGGCCCTCTCACTGGTCTTGGTTCAGCCTAGGCTTCAGTTCCCTTGACTGACCACTCAGGGCTTCCCTTCTCCTACCCCAGGAACAAGGAGTGTCCTACCTGCCGAAAGAAGCTGGTGTCCAAGCGATCCCTACGGCCAGACCCCAACTTTGATGCCCTGATCTCTAAGATCTATCCTAGCCGGGAGGAATACGAGGCCCATCAAGACCGAGTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:33209707|33210047 hsa-miR-205-5p 0 0 1
chr6:33209707|33210047 hsa-miR-205-3p 0 0 1
chr6:33209707|33210047 hsa-miR-520g-5p 0 0 1
chr6:33209707|33210047 hsa-miR-520g-3p 0 0 1
chr6:33209707|33210047 hsa-miR-520h 0 0 1
chr6:33209707|33210047 hsa-miR-593-5p 0 0 1
chr6:33209707|33210047 hsa-miR-593-3p 0 0 1
chr6:33209707|33210047 hsa-miR-630 0 0 1
chr6:33209707|33210047 hsa-miR-638 1 1 1
chr6:33209707|33210047 hsa-miR-645 0 0 1
chr6:33209707|33210047 hsa-miR-650 0 0 1
chr6:33209707|33210047 hsa-miR-1226-5p 0 0 1
chr6:33209707|33210047 hsa-miR-1226-3p 0 0 1
chr6:33209707|33210047 hsa-miR-1303 0 1 1
chr6:33209707|33210047 hsa-miR-1197 0 0 1
chr6:33209707|33210047 hsa-miR-671-5p 1 1 1
chr6:33209707|33210047 hsa-miR-615-5p 1 0 1
chr6:33209707|33210047 hsa-miR-876-3p 0 0 1
chr6:33209707|33210047 hsa-miR-125a-5p 0 0 1
chr6:33209707|33210047 hsa-miR-483-3p 0 0 1
chr6:33209707|33210047 hsa-miR-542-3p 0 0 1
chr6:33209707|33210047 hsa-miR-556-3p 0 0 1
chr6:33209707|33210047 hsa-miR-371-5p 0 0 1
chr6:33209707|33210047 hsa-miR-323-5p 0 0 1
chr6:33209707|33210047 hsa-miR-125b 0 0 1
chr6:33209707|33210047 hsa-miR-608 1 0 0
chr6:33209707|33210047 hsa-miR-765 1 0 0
chr6:33209707|33210047 hsa-miR-298 1 0 0
chr6:33209707|33210047 hsa-miR-760 1 0 0
chr6:33209707|33210047 hsa-miR-2278 0 1 0
chr6:33209707|33210047 hsa-miR-2861 1 0 0
chr6:33209707|33210047 hsa-miR-3132 1 1 0
chr6:33209707|33210047 hsa-miR-3135a 0 1 0
chr6:33209707|33210047 hsa-miR-3154 0 1 0
chr6:33209707|33210047 hsa-miR-4298 1 0 0
chr6:33209707|33210047 hsa-miR-4259 1 1 0
chr6:33209707|33210047 hsa-miR-3929 0 1 0
chr6:33209707|33210047 hsa-miR-4437 1 0 0
chr6:33209707|33210047 hsa-miR-4448 1 1 0
chr6:33209707|33210047 hsa-miR-4471 0 1 0
chr6:33209707|33210047 hsa-miR-4478 0 1 0
chr6:33209707|33210047 hsa-miR-4483 1 0 0
chr6:33209707|33210047 hsa-miR-4496 1 0 0
chr6:33209707|33210047 hsa-miR-4516 0 1 0
chr6:33209707|33210047 hsa-miR-4651 1 0 0
chr6:33209707|33210047 hsa-miR-4675 0 1 0
chr6:33209707|33210047 hsa-miR-4739 1 0 0
chr6:33209707|33210047 hsa-miR-4741 0 1 0
chr6:33209707|33210047 hsa-miR-5090 1 0 0
chr6:33209707|33210047 hsa-miR-5572 1 0 0
chr6:33209707|33210047 hsa-miR-7515 0 1 0
chr6:33209707|33210047 hsa-miR-7974 0 1 0
chr6:33209707|33210047 hsa-miR-8059 0 1 0
chr6:33209707|33210047 hsa-miR-8078 1 0 0
chr6:33209707|33210047 hsa-miR-8089 1 0 0
chr6:33209707|33210047 hsa-miR-7155-5p 1 0 0
chr6:33209707|33210047 hsa-miR-323a-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6747-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6822-3p 0 1 0
chr6:33209707|33210047 hsa-miR-5187-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6746-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6727-5p 1 0 0
chr6:33209707|33210047 hsa-miR-197-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6783-5p 1 0 0
chr6:33209707|33210047 hsa-miR-7108-5p 1 0 0
chr6:33209707|33210047 hsa-miR-423-3p 1 1 0
chr6:33209707|33210047 hsa-miR-6827-5p 1 1 0
chr6:33209707|33210047 hsa-miR-6770-5p 0 1 0
chr6:33209707|33210047 hsa-miR-6760-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6881-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6782-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6852-5p 0 1 0
chr6:33209707|33210047 hsa-miR-5088-5p 1 0 0
chr6:33209707|33210047 hsa-miR-1229-5p 1 0 0
chr6:33209707|33210047 hsa-miR-3127-5p 0 1 0
chr6:33209707|33210047 hsa-miR-7161-3p 0 1 0
chr6:33209707|33210047 hsa-miR-296-3p 1 0 0
chr6:33209707|33210047 hsa-miR-6878-3p 0 1 0
chr6:33209707|33210047 hsa-miR-3648 1 0 0
chr6:33209707|33210047 hsa-miR-4638-3p 1 0 0
chr6:33209707|33210047 hsa-miR-4446-3p 0 1 0
chr6:33209707|33210047 hsa-miR-6824-5p 1 0 0
chr6:33209707|33210047 hsa-miR-7160-3p 0 1 0
chr6:33209707|33210047 hsa-miR-3158-3p 1 0 0
chr6:33209707|33210047 hsa-miR-5000-3p 1 0 0
chr6:33209707|33210047 hsa-miR-6501-3p 0 1 0
chr6:33209707|33210047 hsa-miR-6851-3p 1 0 0
chr6:33209707|33210047 hsa-miR-18b-3p 0 1 0
chr6:33209707|33210047 hsa-miR-1207-5p 1 0 0
chr6:33209707|33210047 hsa-miR-1233-5p 1 0 0
chr6:33209707|33210047 hsa-miR-4763-3p 1 0 0
chr6:33209707|33210047 hsa-miR-6769b-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6778-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6812-5p 1 1 0
chr6:33209707|33210047 hsa-miR-6816-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6775-5p 1 0 0
chr6:33209707|33210047 hsa-miR-5001-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6726-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6737-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6743-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6756-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6819-5p 1 0 0
chr6:33209707|33210047 hsa-miR-1249-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6722-3p 1 0 0
chr6:33209707|33210047 hsa-miR-6788-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6797-5p 1 0 0
chr6:33209707|33210047 hsa-miR-7111-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6866-3p 0 1 0
chr6:33209707|33210047 hsa-miR-3620-5p 1 0 0
chr6:33209707|33210047 hsa-miR-5189-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6780b-5p 1 0 0
chr6:33209707|33210047 hsa-miR-10392-5p 1 1 0
chr6:33209707|33210047 hsa-miR-4632-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6846-5p 1 0 0
chr6:33209707|33210047 hsa-miR-4758-5p 0 1 0
chr6:33209707|33210047 hsa-miR-6855-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6750-5p 0 1 0
chr6:33209707|33210047 hsa-miR-4667-5p 1 0 0
chr6:33209707|33210047 hsa-miR-6791-5p 1 1 0
chr6:33209707|33210047 hsa-miR-6529-5p 1 1 0
chr6:33209707|33210047 hsa-miR-6718-5p 0 1 0
chr6:33209707|33210047 hsa-miR-4735-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:33209707|33210047
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MLKNTMTTKECLHRFCSDCIVTALRSG
Nucleotide Sequence ATGCTGAAGAATACGATGACCACCAAGGAGTGCCTCCACAGATTCTGCTCTGACTGCATTGTCACAGCCCTACGGAGCGGGTAA
CircID chr6:33209707|33210047
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MTTQGFPSPTPGTRSVLPAERSWCPSDPYGQTPTLMP
Nucleotide Sequence CTGACCACTCAGGGCTTCCCTTCTCCTACCCCAGGAACAAGGAGTGTCCTACCTGCCGAAAGAAGCTGGTGTCCAAGCGATCCCTACGGCCAGACCCCAACTTTGATGCCCTGA
CircID chr6:33209707|33210047
ORF Type ORF3
Protein Length 57
Nucleotide Length 171
Protein Sequence MTDHSGLPFSYPRNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAHQDRV
Nucleotide Sequence TTGACTGACCACTCAGGGCTTCCCTTCTCCTACCCCAGGAACAAGGAGTGTCCTACCTGCCGAAAGAAGCTGGTGTCCAAGCGATCCCTACGGCCAGACCCCAACTTTGATGCCCTGATCTCTAAGATCTATCCTAGCCGGGAGGAATACGAGGCCCATCAAGACCGAGTG
CircID chr6:33209707|33210047
ORF Type ORF4
Protein Length 40
Nucleotide Length 120
Protein Sequence MYPFISSQTCLSYYPLRRAVTMQSEQNLWRHSLVVIVFFS
Nucleotide Sequence TTGTACCCCTTCATCTCATCTCAAACATGTCTCTCCTATTACCCGCTCCGTAGGGCTGTGACAATGCAGTCAGAGCAGAATCTGTGGAGGCACTCCTTGGTGGTCATCGTATTCTTCAGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab