CircRNA Information

General Information
circRNA Basic Information
CircID chr6:33267101|33267266
Strand +
CircType exon
Host Gene ENSG00000223501.7;
Algorism CIRI2;
Sequence CCGCGGCTCTGTCATCTCCCCCACTGAACTTGAGGCCCCCATCCTGGTGCCTCACACAGCGCAGCGCGGAGAGCAGAGGGTATGAGGAGGAACAAGCTTCAGTCACGAAAGAGGCTCTGAGCACGGTGGGGAGGGAAGGCCAGACCTCAGGGCAGAGCTTCCCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:33267101|33267266 hsa-miR-143-5p 0 0 1
chr6:33267101|33267266 hsa-miR-143-3p 0 0 1
chr6:33267101|33267266 hsa-miR-134-5p 0 0 1
chr6:33267101|33267266 hsa-miR-134-3p 0 0 1
chr6:33267101|33267266 hsa-miR-625-5p 0 0 1
chr6:33267101|33267266 hsa-miR-625-3p 0 0 1
chr6:33267101|33267266 hsa-miR-874-5p 0 0 1
chr6:33267101|33267266 hsa-miR-874-3p 0 0 1
chr6:33267101|33267266 hsa-miR-937-5p 0 0 1
chr6:33267101|33267266 hsa-miR-937-3p 0 0 1
chr6:33267101|33267266 hsa-miR-1294 0 0 1
chr6:33267101|33267266 hsa-miR-1275 0 1 1
chr6:33267101|33267266 hsa-miR-1827 0 0 1
chr6:33267101|33267266 hsa-miR-127-5p 0 0 1
chr6:33267101|33267266 hsa-miR-146b-3p 0 0 1
chr6:33267101|33267266 hsa-miR-767-3p 1 0 1
chr6:33267101|33267266 hsa-miR-324-3p 0 0 1
chr6:33267101|33267266 hsa-miR-125a-5p 0 0 1
chr6:33267101|33267266 hsa-miR-1280 0 0 1
chr6:33267101|33267266 hsa-miR-125b 0 0 1
chr6:33267101|33267266 hsa-miR-642 0 0 1
chr6:33267101|33267266 hsa-miR-346 1 0 0
chr6:33267101|33267266 hsa-miR-1913 1 0 0
chr6:33267101|33267266 hsa-miR-544b 0 1 0
chr6:33267101|33267266 hsa-miR-3175 0 1 0
chr6:33267101|33267266 hsa-miR-4439 0 1 0
chr6:33267101|33267266 hsa-miR-2392 0 1 0
chr6:33267101|33267266 hsa-miR-5193 0 1 0
chr6:33267101|33267266 hsa-miR-5698 1 0 0
chr6:33267101|33267266 hsa-miR-7976 0 1 0
chr6:33267101|33267266 hsa-miR-6749-3p 1 0 0
chr6:33267101|33267266 hsa-miR-18a-3p 0 1 0
chr6:33267101|33267266 hsa-miR-3194-3p 0 1 0
chr6:33267101|33267266 hsa-miR-6747-3p 1 0 0
chr6:33267101|33267266 hsa-miR-6875-3p 1 0 0
chr6:33267101|33267266 hsa-miR-6796-3p 0 1 0
chr6:33267101|33267266 hsa-miR-877-3p 1 0 0
chr6:33267101|33267266 hsa-miR-6868-3p 1 0 0
chr6:33267101|33267266 hsa-miR-6728-3p 1 1 0
chr6:33267101|33267266 hsa-miR-194-3p 0 1 0
chr6:33267101|33267266 hsa-miR-5010-5p 1 1 0
chr6:33267101|33267266 hsa-miR-6828-3p 0 1 0
chr6:33267101|33267266 hsa-miR-4727-3p 0 1 0
chr6:33267101|33267266 hsa-miR-6818-5p 0 1 0
chr6:33267101|33267266 hsa-miR-2276-5p 0 1 0
chr6:33267101|33267266 hsa-miR-7848-3p 0 1 0
chr6:33267101|33267266 hsa-miR-6738-3p 1 0 0
chr6:33267101|33267266 hsa-miR-328-3p 1 0 0
chr6:33267101|33267266 hsa-miR-4649-3p 1 1 0
chr6:33267101|33267266 hsa-miR-6760-3p 1 0 0
chr6:33267101|33267266 hsa-miR-6880-3p 0 1 0
chr6:33267101|33267266 hsa-miR-3124-3p 0 1 0
chr6:33267101|33267266 hsa-miR-6734-3p 0 1 0
chr6:33267101|33267266 hsa-miR-6870-5p 1 1 0
chr6:33267101|33267266 hsa-miR-6752-5p 1 0 0
chr6:33267101|33267266 hsa-miR-6756-5p 1 0 0
chr6:33267101|33267266 hsa-miR-7111-5p 1 1 0
chr6:33267101|33267266 hsa-miR-320a-5p 1 1 0
chr6:33267101|33267266 hsa-miR-6848-5p 1 0 0
chr6:33267101|33267266 hsa-miR-4723-5p 0 1 0
chr6:33267101|33267266 hsa-miR-939-5p 1 1 0
chr6:33267101|33267266 hsa-miR-5008-3p 1 1 0
chr6:33267101|33267266 hsa-miR-4665-5p 0 1 0
chr6:33267101|33267266 hsa-miR-6792-3p 1 0 0
chr6:33267101|33267266 hsa-miR-6805-3p 1 0 0
chr6:33267101|33267266 hsa-miR-6829-3p 1 0 0
chr6:33267101|33267266 hsa-miR-3928-5p 0 1 0
chr6:33267101|33267266 hsa-miR-9851-3p 0 1 0
chr6:33267101|33267266 hsa-miR-4691-5p 1 0 0
chr6:33267101|33267266 hsa-miR-5006-3p 0 1 0
chr6:33267101|33267266 hsa-miR-6833-3p 0 1 0
chr6:33267101|33267266 hsa-miR-6824-3p 1 0 0
chr6:33267101|33267266 hsa-miR-6806-3p 0 1 0
chr6:33267101|33267266 hsa-miR-3922-3p 0 1 0
chr6:33267101|33267266 hsa-miR-6764-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:33267101|33267266
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MSSPPLNLRPPSWCLTQRSAESRGYEEEQASVTKEALSTVGREGQTSGQSFP
Nucleotide Sequence CTGTCATCTCCCCCACTGAACTTGAGGCCCCCATCCTGGTGCCTCACACAGCGCAGCGCGGAGAGCAGAGGGTATGAGGAGGAACAAGCTTCAGTCACGAAAGAGGCTCTGAGCACGGTGGGGAGGGAAGGCCAGACCTCAGGGCAGAGCTTCCCA
CircID chr6:33267101|33267266
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MLSALRCVRHQDGGLKFSGGDDRAA
Nucleotide Sequence CTGCTCTCCGCGCTGCGCTGTGTGAGGCACCAGGATGGGGGCCTCAAGTTCAGTGGGGGAGATGACAGAGCCGCG
CircID chr6:33267101|33267266
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MFLLIPSALRAALCEAPGWGPQVQWGR
Nucleotide Sequence TTGTTCCTCCTCATACCCTCTGCTCTCCGCGCTGCGCTGTGTGAGGCACCAGGATGGGGGCCTCAAGTTCAGTGGGGGAGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab