CircRNA Information

General Information
circRNA Basic Information
CircID chr6:33291743|33292130
Strand -
CircType exon
Host Gene ENSG00000237441.8;
Algorism CIRI2;
Sequence CTACATTTTGCCATTCCCCTCTGCCCTGGGGCTCAGAGCCTTGAAGCCTTTGCTTGGCCCTTGCATGTTAGGATATGGCCAAGAATCAGAAACTGATGCGTTTTTCCAGCACTACCTGTGTGCTGCACTCATGGAAGGTGGGAAGCTATACACAGGTATCCAACTTGGTTATAAGACACCAGTTCCCACAGGGCTGGATTTCTCAGCTGTCTGGTAAACCAGTGGCACTTCACTGCCCCAGGGTGGCTGGCTCCCTTTCTGAATTTCTGTCTCAATGTGATATAATTGCCACCATTCAGGATGGCTACCCACATCTGGTATGAACACCATGACTTCTGTAAGCCAACGGGGCTTCCTCCTCAGAACAGTGCCCGTGCAATCTTCCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:33291743|33292130 hsa-miR-23a-5p 0 0 1
chr6:33291743|33292130 hsa-miR-23a-3p 0 0 1
chr6:33291743|33292130 hsa-miR-25-5p 0 0 1
chr6:33291743|33292130 hsa-miR-25-3p 0 0 1
chr6:33291743|33292130 hsa-miR-32-5p 0 0 1
chr6:33291743|33292130 hsa-miR-32-3p 0 0 1
chr6:33291743|33292130 hsa-miR-107 0 0 1
chr6:33291743|33292130 hsa-miR-34a-5p 0 0 1
chr6:33291743|33292130 hsa-miR-34a-3p 0 0 1
chr6:33291743|33292130 hsa-miR-23b-5p 0 0 1
chr6:33291743|33292130 hsa-miR-23b-3p 0 0 1
chr6:33291743|33292130 hsa-miR-363-5p 0 0 1
chr6:33291743|33292130 hsa-miR-363-3p 0 0 1
chr6:33291743|33292130 hsa-miR-367-5p 0 0 1
chr6:33291743|33292130 hsa-miR-367-3p 0 0 1
chr6:33291743|33292130 hsa-miR-196b-5p 0 0 1
chr6:33291743|33292130 hsa-miR-196b-3p 0 0 1
chr6:33291743|33292130 hsa-miR-449a 0 0 1
chr6:33291743|33292130 hsa-miR-520f-5p 0 0 1
chr6:33291743|33292130 hsa-miR-520f-3p 0 0 1
chr6:33291743|33292130 hsa-miR-539-5p 0 0 1
chr6:33291743|33292130 hsa-miR-539-3p 0 0 1
chr6:33291743|33292130 hsa-miR-92b-5p 0 0 1
chr6:33291743|33292130 hsa-miR-92b-3p 0 0 1
chr6:33291743|33292130 hsa-miR-573 0 0 1
chr6:33291743|33292130 hsa-miR-588 0 0 1
chr6:33291743|33292130 hsa-miR-600 0 0 1
chr6:33291743|33292130 hsa-miR-449b-5p 0 0 1
chr6:33291743|33292130 hsa-miR-449b-3p 0 0 1
chr6:33291743|33292130 hsa-miR-760 1 0 1
chr6:33291743|33292130 hsa-miR-1227-5p 0 0 1
chr6:33291743|33292130 hsa-miR-1227-3p 0 0 1
chr6:33291743|33292130 hsa-miR-1206 0 0 1
chr6:33291743|33292130 hsa-miR-1208 0 0 1
chr6:33291743|33292130 hsa-miR-1287-5p 0 0 1
chr6:33291743|33292130 hsa-miR-1287-3p 0 0 1
chr6:33291743|33292130 hsa-miR-1261 0 0 1
chr6:33291743|33292130 hsa-miR-1292-5p 0 0 1
chr6:33291743|33292130 hsa-miR-1292-3p 0 0 1
chr6:33291743|33292130 hsa-miR-1306-5p 0 0 1
chr6:33291743|33292130 hsa-miR-1306-3p 0 0 1
chr6:33291743|33292130 hsa-miR-1324 0 0 1
chr6:33291743|33292130 hsa-miR-671-5p 1 0 1
chr6:33291743|33292130 hsa-miR-1225-3p 0 0 1
chr6:33291743|33292130 hsa-miR-512-3p 0 0 1
chr6:33291743|33292130 hsa-miR-486-3p 0 0 1
chr6:33291743|33292130 hsa-miR-299-3p 0 0 1
chr6:33291743|33292130 hsa-miR-146b-3p 0 0 1
chr6:33291743|33292130 hsa-miR-1224-3p 0 0 1
chr6:33291743|33292130 hsa-miR-188-3p 0 0 1
chr6:33291743|33292130 hsa-miR-576-3p 0 0 1
chr6:33291743|33292130 hsa-miR-875-3p 0 0 1
chr6:33291743|33292130 hsa-miR-299-5p 0 0 1
chr6:33291743|33292130 hsa-miR-485-3p 0 0 1
chr6:33291743|33292130 hsa-miR-34c-5p 0 0 1
chr6:33291743|33292130 hsa-miR-582-3p 0 0 1
chr6:33291743|33292130 hsa-miR-1260 0 0 1
chr6:33291743|33292130 hsa-miR-1280 0 0 1
chr6:33291743|33292130 hsa-miR-1233 0 0 1
chr6:33291743|33292130 hsa-miR-103 0 0 1
chr6:33291743|33292130 hsa-miR-196a 0 0 1
chr6:33291743|33292130 hsa-miR-92a 0 0 1
chr6:33291743|33292130 hsa-miR-557 1 0 0
chr6:33291743|33292130 hsa-miR-602 1 0 0
chr6:33291743|33292130 hsa-miR-3154 1 0 0
chr6:33291743|33292130 hsa-miR-4298 1 0 0
chr6:33291743|33292130 hsa-miR-4656 1 0 0
chr6:33291743|33292130 hsa-miR-4688 1 0 0
chr6:33291743|33292130 hsa-miR-5090 1 0 0
chr6:33291743|33292130 hsa-miR-6127 1 0 0
chr6:33291743|33292130 hsa-miR-7150 1 0 0
chr6:33291743|33292130 hsa-miR-8072 1 0 0
chr6:33291743|33292130 hsa-miR-138-5p 1 0 0
chr6:33291743|33292130 hsa-miR-134-5p 1 0 0
chr6:33291743|33292130 hsa-miR-92a-2-5p 1 0 0
chr6:33291743|33292130 hsa-miR-7106-5p 1 0 0
chr6:33291743|33292130 hsa-miR-6857-5p 1 0 0
chr6:33291743|33292130 hsa-miR-7114-5p 1 0 0
chr6:33291743|33292130 hsa-miR-7847-3p 1 0 0
chr6:33291743|33292130 hsa-miR-4695-5p 1 0 0
chr6:33291743|33292130 hsa-miR-6741-5p 1 0 0
chr6:33291743|33292130 hsa-miR-6727-5p 1 0 0
chr6:33291743|33292130 hsa-miR-197-5p 1 0 0
chr6:33291743|33292130 hsa-miR-3180-3p 1 0 0
chr6:33291743|33292130 hsa-miR-2467-3p 1 0 0
chr6:33291743|33292130 hsa-miR-3194-5p 1 0 0
chr6:33291743|33292130 hsa-miR-6810-5p 1 0 0
chr6:33291743|33292130 hsa-miR-5006-5p 1 0 0
chr6:33291743|33292130 hsa-miR-6753-5p 1 0 0
chr6:33291743|33292130 hsa-miR-3065-3p 1 0 0
chr6:33291743|33292130 hsa-miR-2277-5p 1 0 0
chr6:33291743|33292130 hsa-miR-3177-3p 1 0 0
chr6:33291743|33292130 hsa-miR-4699-5p 1 0 0
chr6:33291743|33292130 hsa-miR-4763-3p 1 0 0
chr6:33291743|33292130 hsa-miR-6865-5p 1 0 0
chr6:33291743|33292130 hsa-miR-6775-5p 1 0 0
chr6:33291743|33292130 hsa-miR-1343-5p 1 0 0
chr6:33291743|33292130 hsa-miR-6726-5p 1 0 0
chr6:33291743|33292130 hsa-miR-6743-5p 1 0 0
chr6:33291743|33292130 hsa-miR-11181-3p 1 0 0
chr6:33291743|33292130 hsa-miR-6722-3p 1 0 0
chr6:33291743|33292130 hsa-miR-6774-5p 1 0 0
chr6:33291743|33292130 hsa-miR-6879-5p 1 0 0
chr6:33291743|33292130 hsa-miR-4728-5p 1 0 0
chr6:33291743|33292130 hsa-miR-6780b-5p 1 0 0
chr6:33291743|33292130 hsa-miR-6836-5p 1 0 0
chr6:33291743|33292130 hsa-miR-1909-3p 1 0 0
chr6:33291743|33292130 hsa-miR-449c-5p 1 0 0
chr6:33291743|33292130 hsa-miR-4632-5p 1 0 0
chr6:33291743|33292130 hsa-miR-4685-5p 1 0 0
chr6:33291743|33292130 hsa-miR-4726-5p 1 0 0
chr6:33291743|33292130 hsa-miR-6735-5p 1 0 0
chr6:33291743|33292130 hsa-miR-6858-5p 1 0 0
chr6:33291743|33292130 hsa-miR-939-5p 1 0 0
chr6:33291743|33292130 hsa-miR-1238-5p 1 0 0
chr6:33291743|33292130 hsa-miR-6791-5p 1 0 0
chr6:33291743|33292130 hsa-miR-6837-5p 1 0 0
chr6:33291743|33292130 hsa-miR-3619-5p 1 0 0
chr6:33291743|33292130 hsa-miR-892c-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:33291743|33292130
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MPPFRMATHIWYEHHDFCKPTGLPPQNSARAIFL
Nucleotide Sequence TTGCCACCATTCAGGATGGCTACCCACATCTGGTATGAACACCATGACTTCTGTAAGCCAACGGGGCTTCCTCCTCAGAACAGTGCCCGTGCAATCTTCCTC
CircID chr6:33291743|33292130
ORF Type ORF2
Protein Length 69
Nucleotide Length 210
Protein Sequence MPFPSALGLRALKPLLGPCMLGYGQESETDAFFQHYLCAALMEGGKLYTGIQLGYKTPVPTGLDFSAVW
Nucleotide Sequence TTGCCATTCCCCTCTGCCCTGGGGCTCAGAGCCTTGAAGCCTTTGCTTGGCCCTTGCATGTTAGGATATGGCCAAGAATCAGAAACTGATGCGTTTTTCCAGCACTACCTGTGTGCTGCACTCATGGAAGGTGGGAAGCTATACACAGGTATCCAACTTGGTTATAAGACACCAGTTCCCACAGGGCTGGATTTCTCAGCTGTCTGGTAA
CircID chr6:33291743|33292130
ORF Type ORF3
Protein Length 82
Nucleotide Length 249
Protein Sequence MAKNQKLMRFSSTTCVLHSWKVGSYTQVSNLVIRHQFPQGWISQLSGKPVALHCPRVAGSLSEFLSQCDIIATIQDGYPHLV
Nucleotide Sequence ATGGCCAAGAATCAGAAACTGATGCGTTTTTCCAGCACTACCTGTGTGCTGCACTCATGGAAGGTGGGAAGCTATACACAGGTATCCAACTTGGTTATAAGACACCAGTTCCCACAGGGCTGGATTTCTCAGCTGTCTGGTAAACCAGTGGCACTTCACTGCCCCAGGGTGGCTGGCTCCCTTTCTGAATTTCTGTCTCAATGTGATATAATTGCCACCATTCAGGATGGCTACCCACATCTGGTATGA
CircID chr6:33291743|33292130
ORF Type ORF4
Protein Length 64
Nucleotide Length 195
Protein Sequence MRRKPRWLTEVMVFIPDVGSHPEWWQLYHIETEIQKGSQPPWGSEVPLVYQTAEKSSPVGTGVL
Nucleotide Sequence CTGAGGAGGAAGCCCCGTTGGCTTACAGAAGTCATGGTGTTCATACCAGATGTGGGTAGCCATCCTGAATGGTGGCAATTATATCACATTGAGACAGAAATTCAGAAAGGGAGCCAGCCACCCTGGGGCAGTGAAGTGCCACTGGTTTACCAGACAGCTGAGAAATCCAGCCCTGTGGGAACTGGTGTCTTATAA
CircID chr6:33291743|33292130
ORF Type ORF5
Protein Length 61
Nucleotide Length 186
Protein Sequence MWVAILNGGNYITLRQKFRKGASHPGAVKCHWFTRQLRNPALWELVSYNQVGYLCIASHLP
Nucleotide Sequence ATGTGGGTAGCCATCCTGAATGGTGGCAATTATATCACATTGAGACAGAAATTCAGAAAGGGAGCCAGCCACCCTGGGGCAGTGAAGTGCCACTGGTTTACCAGACAGCTGAGAAATCCAGCCCTGTGGGAACTGGTGTCTTATAACCAAGTTGGATACCTGTGTATAGCTTCCCACCTTCCATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab