CircRNA Information

General Information
circRNA Basic Information
CircID chr6:33299735|33299977
Strand +
CircType exon
Host Gene ENSG00000231925.10;
Algorism CIRI2;
Sequence CACAGTTGTATTTAAGTGATCGTGTGAGTCGTCGTTAAATGCCTGTCTCCCCGCGGATCATGGGCTCCTCGAGGACAGGGACTGGCCTGTCTGTCCACTGCTGTAACCCCGCGCCGGCATAGGGACCTAAGGCCCACTGGAGGGCGCTCATCAAGTAGCTGCTGGATGTTGACGAAGGAAGCGGCGGCGCAGCTCAGGGATCTCCGAGTCAGGACGGTCGGCCAGACCCACGGGGTAACGGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:33299735|33299977 hsa-miR-345-5p 0 0 1
chr6:33299735|33299977 hsa-miR-345-3p 0 0 1
chr6:33299735|33299977 hsa-miR-505-5p 0 0 1
chr6:33299735|33299977 hsa-miR-505-3p 0 0 1
chr6:33299735|33299977 hsa-miR-558 0 0 1
chr6:33299735|33299977 hsa-miR-611 1 0 1
chr6:33299735|33299977 hsa-miR-646 0 1 1
chr6:33299735|33299977 hsa-miR-1324 0 0 1
chr6:33299735|33299977 hsa-miR-1825 0 0 1
chr6:33299735|33299977 hsa-miR-193a-5p 0 0 1
chr6:33299735|33299977 hsa-miR-199a-5p 0 0 1
chr6:33299735|33299977 hsa-miR-339-5p 1 1 1
chr6:33299735|33299977 hsa-miR-339-3p 0 0 1
chr6:33299735|33299977 hsa-miR-199b-5p 0 0 1
chr6:33299735|33299977 hsa-miR-338-3p 0 0 1
chr6:33299735|33299977 hsa-miR-125a-5p 0 0 1
chr6:33299735|33299977 hsa-miR-342-3p 0 0 1
chr6:33299735|33299977 hsa-miR-516a-3p 0 0 1
chr6:33299735|33299977 hsa-miR-151-5p 0 0 1
chr6:33299735|33299977 hsa-miR-1274a 0 0 1
chr6:33299735|33299977 hsa-miR-125b 0 0 1
chr6:33299735|33299977 hsa-miR-1274b 0 0 1
chr6:33299735|33299977 hsa-miR-151b 0 1 0
chr6:33299735|33299977 hsa-miR-1469 1 0 0
chr6:33299735|33299977 hsa-miR-2861 1 0 0
chr6:33299735|33299977 hsa-miR-3138 0 1 0
chr6:33299735|33299977 hsa-miR-3170 1 0 0
chr6:33299735|33299977 hsa-miR-4319 0 1 0
chr6:33299735|33299977 hsa-miR-3665 1 0 0
chr6:33299735|33299977 hsa-miR-1268b 1 0 0
chr6:33299735|33299977 hsa-miR-3135b 1 0 0
chr6:33299735|33299977 hsa-miR-4466 1 0 0
chr6:33299735|33299977 hsa-miR-4519 0 1 0
chr6:33299735|33299977 hsa-miR-4683 0 1 0
chr6:33299735|33299977 hsa-miR-4689 1 0 0
chr6:33299735|33299977 hsa-miR-4706 1 1 0
chr6:33299735|33299977 hsa-miR-6081 1 0 0
chr6:33299735|33299977 hsa-miR-1972 0 1 0
chr6:33299735|33299977 hsa-miR-125a-3p 1 0 0
chr6:33299735|33299977 hsa-miR-6089 1 0 0
chr6:33299735|33299977 hsa-miR-6762-3p 1 0 0
chr6:33299735|33299977 hsa-miR-6742-5p 1 0 0
chr6:33299735|33299977 hsa-miR-6810-5p 1 0 0
chr6:33299735|33299977 hsa-miR-6786-5p 1 0 0
chr6:33299735|33299977 hsa-miR-3944-3p 1 0 0
chr6:33299735|33299977 hsa-miR-1908-5p 1 0 0
chr6:33299735|33299977 hsa-miR-3677-3p 1 1 0
chr6:33299735|33299977 hsa-miR-3648 1 0 0
chr6:33299735|33299977 hsa-miR-378a-5p 1 1 0
chr6:33299735|33299977 hsa-miR-3925-3p 0 1 0
chr6:33299735|33299977 hsa-miR-423-5p 1 0 0
chr6:33299735|33299977 hsa-miR-3120-3p 1 0 0
chr6:33299735|33299977 hsa-miR-2114-5p 0 1 0
chr6:33299735|33299977 hsa-miR-744-5p 1 0 0
chr6:33299735|33299977 hsa-miR-214-3p 1 1 0
chr6:33299735|33299977 hsa-miR-2277-5p 1 1 0
chr6:33299735|33299977 hsa-miR-4524a-3p 0 1 0
chr6:33299735|33299977 hsa-miR-5586-5p 0 1 0
chr6:33299735|33299977 hsa-miR-6787-5p 1 0 0
chr6:33299735|33299977 hsa-miR-6812-5p 1 0 0
chr6:33299735|33299977 hsa-miR-6816-5p 1 0 0
chr6:33299735|33299977 hsa-miR-6870-5p 1 0 0
chr6:33299735|33299977 hsa-miR-1343-5p 1 0 0
chr6:33299735|33299977 hsa-miR-4749-5p 1 1 0
chr6:33299735|33299977 hsa-miR-6735-5p 1 0 0
chr6:33299735|33299977 hsa-miR-6777-5p 1 1 0
chr6:33299735|33299977 hsa-miR-6795-5p 1 0 0
chr6:33299735|33299977 hsa-miR-6887-5p 1 0 0
chr6:33299735|33299977 hsa-miR-6889-5p 1 1 0
chr6:33299735|33299977 hsa-miR-939-5p 1 1 0
chr6:33299735|33299977 hsa-miR-4758-5p 1 0 0
chr6:33299735|33299977 hsa-miR-7843-5p 1 0 0
chr6:33299735|33299977 hsa-miR-6855-5p 1 0 0
chr6:33299735|33299977 hsa-miR-6791-3p 1 0 0
chr6:33299735|33299977 hsa-miR-6724-5p 1 0 0
chr6:33299735|33299977 hsa-miR-6791-5p 1 0 0
chr6:33299735|33299977 hsa-miR-4691-5p 1 0 0
chr6:33299735|33299977 hsa-miR-3619-5p 1 0 0
chr6:33299735|33299977 hsa-miR-151a-5p 1 1 0
chr6:33299735|33299977 hsa-miR-6838-5p 1 0 0
chr6:33299735|33299977 hsa-miR-3129-5p 0 1 0
chr6:33299735|33299977 hsa-miR-7162-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:33299735|33299977
ORF Type ORF1
Protein Length 67
Nucleotide Length 201
Protein Sequence MSPRGSWAPRGQGLACLSTAVTPRRHRDLRPTGGRSSSSCWMLTKEAAAQLRDLRVRTVGQTHGVTG
Nucleotide Sequence CTGTCTCCCCGCGGATCATGGGCTCCTCGAGGACAGGGACTGGCCTGTCTGTCCACTGCTGTAACCCCGCGCCGGCATAGGGACCTAAGGCCCACTGGAGGGCGCTCATCAAGTAGCTGCTGGATGTTGACGAAGGAAGCGGCGGCGCAGCTCAGGGATCTCCGAGTCAGGACGGTCGGCCAGACCCACGGGGTAACGGGT
CircID chr6:33299735|33299977
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MPVSPRIMGSSRTGTGLSVHCCNPAPA
Nucleotide Sequence ATGCCTGTCTCCCCGCGGATCATGGGCTCCTCGAGGACAGGGACTGGCCTGTCTGTCCACTGCTGTAACCCCGCGCCGGCATAG
CircID chr6:33299735|33299977
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MLDVDEGSGGAAQGSPSQDGRPDPRGNG
Nucleotide Sequence CTGCTGGATGTTGACGAAGGAAGCGGCGGCGCAGCTCAGGGATCTCCGAGTCAGGACGGTCGGCCAGACCCACGGGGTAACGGG
CircID chr6:33299735|33299977
ORF Type ORF4
Protein Length 66
Nucleotide Length 201
Protein Sequence MTRRSLSCAAASFVNIQQLLDERPPVGLRSLCRRGVTAVDRQASPCPRGAHDPRGDRHLTTTHTIT
Nucleotide Sequence CTGACTCGGAGATCCCTGAGCTGCGCCGCCGCTTCCTTCGTCAACATCCAGCAGCTACTTGATGAGCGCCCTCCAGTGGGCCTTAGGTCCCTATGCCGGCGCGGGGTTACAGCAGTGGACAGACAGGCCAGTCCCTGTCCTCGAGGAGCCCATGATCCGCGGGGAGACAGGCATTTAACGACGACTCACACGATCACTTAA
CircID chr6:33299735|33299977
ORF Type ORF5
Protein Length 39
Nucleotide Length 120
Protein Sequence MMSALQWALGPYAGAGLQQWTDRPVPVLEEPMIRGETGI
Nucleotide Sequence TTGATGAGCGCCCTCCAGTGGGCCTTAGGTCCCTATGCCGGCGCGGGGTTACAGCAGTGGACAGACAGGCCAGTCCCTGTCCTCGAGGAGCCCATGATCCGCGGGGAGACAGGCATTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab